% for i in human.gb/9606/PRJNA168/NC_0000* for> do for> echo $i for> base=`basename $i` for> mkdir -p work for> time ruby insdc2ttl.rb -d refseq $i > work/$base.ttl for> done human.gb/9606/PRJNA168/NC_000001 Features: {"assembly_gap":22,"misc_RNA":1135,"precursor_RNA":126,"ncRNA":224,"mRNA":6604,"CDS":6604,"exon":393,"tRNA":82,"rRNA":17} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 43.75s user 2.75s system 95% cpu 48.583 total human.gb/9606/PRJNA168/NC_000002 Error: New database 'IMGT/GENE-DB' found. Add it to the rs_id.json file and/or Identifiers.org. Features: {"assembly_gap":15,"mRNA":4380,"misc_RNA":915,"CDS":4463,"exon":232,"precursor_RNA":98,"ncRNA":149,"tRNA":8,"C_region":1,"J_segment":5,"V_segment":78} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 42.64s user 2.41s system 99% cpu 45.251 total human.gb/9606/PRJNA168/NC_000003 Features: {"assembly_gap":7,"misc_RNA":732,"mRNA":3902,"CDS":3901,"exon":202,"precursor_RNA":70,"ncRNA":115,"tRNA":4} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 29.27s user 1.83s system 99% cpu 31.236 total human.gb/9606/PRJNA168/NC_000004 Features: {"assembly_gap":12,"exon":199,"mRNA":2589,"CDS":2589,"misc_RNA":470,"precursor_RNA":56,"ncRNA":81,"tRNA":1} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 20.87s user 1.79s system 97% cpu 23.279 total human.gb/9606/PRJNA168/NC_000005 Features: {"assembly_gap":6,"mRNA":2666,"CDS":2666,"misc_RNA":541,"exon":197,"precursor_RNA":67,"ncRNA":94,"C_region":1,"tRNA":17} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 18.39s user 1.68s system 99% cpu 20.183 total human.gb/9606/PRJNA168/NC_000006 Features: {"assembly_gap":8,"exon":216,"misc_RNA":659,"mRNA":3150,"CDS":3150,"precursor_RNA":54,"ncRNA":83,"tRNA":153} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 22.07s user 1.62s system 99% cpu 23.809 total human.gb/9606/PRJNA168/NC_000007 Error: New database 'IMGT/GENE-DB' found. Add it to the rs_id.json file and/or Identifiers.org. Features: {"assembly_gap":8,"misc_RNA":678,"mRNA":2910,"CDS":2990,"precursor_RNA":67,"ncRNA":108,"exon":202,"C_region":3,"J_segment":13,"V_segment":63,"tRNA":22,"D_segment":1} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 19.19s user 1.55s system 99% cpu 20.788 total human.gb/9606/PRJNA168/NC_000008 Features: {"assembly_gap":9,"misc_RNA":452,"mRNA":2223,"CDS":2224,"precursor_RNA":67,"ncRNA":94,"exon":189,"V_segment":1,"tRNA":5} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 17.77s user 1.33s system 99% cpu 19.137 total human.gb/9606/PRJNA168/NC_000009 Error: New database 'IMGT/GENE-DB' found. Add it to the rs_id.json file and/or Identifiers.org. Features: {"assembly_gap":29,"misc_RNA":532,"mRNA":2607,"CDS":2616,"precursor_RNA":71,"ncRNA":117,"exon":157,"tRNA":3,"V_segment":9} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 17.96s user 1.39s system 99% cpu 19.403 total human.gb/9606/PRJNA168/NC_000010 Features: {"assembly_gap":12,"mRNA":2832,"CDS":2832,"precursor_RNA":60,"ncRNA":79,"misc_RNA":537,"exon":140,"tRNA":3} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 19.02s user 1.39s system 99% cpu 20.550 total human.gb/9606/PRJNA168/NC_000011 Features: {"assembly_gap":11,"exon":183,"misc_RNA":596,"mRNA":3891,"CDS":3891,"precursor_RNA":69,"ncRNA":133,"tRNA":13} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 24.87s user 1.44s system 99% cpu 26.353 total human.gb/9606/PRJNA168/NC_000012 Features: {"assembly_gap":8,"misc_RNA":603,"mRNA":3372,"CDS":3372,"precursor_RNA":56,"ncRNA":85,"exon":189,"tRNA":9} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 21.86s user 1.40s system 99% cpu 23.337 total human.gb/9606/PRJNA168/NC_000013 Features: {"assembly_gap":10,"exon":85,"misc_RNA":319,"ncRNA":79,"mRNA":1096,"CDS":1096,"precursor_RNA":37,"tRNA":4} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 9.49s user 0.95s system 98% cpu 10.576 total human.gb/9606/PRJNA168/NC_000014 Error: New database 'IMGT/GENE-DB' found. Add it to the rs_id.json file and/or Identifiers.org. Features: {"assembly_gap":5,"mRNA":2077,"CDS":2373,"exon":121,"misc_RNA":395,"ncRNA":172,"tRNA":19,"V_segment":180,"D_segment":30,"J_segment":74,"C_region":15,"precursor_RNA":83} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 16.37s user 0.98s system 99% cpu 17.449 total human.gb/9606/PRJNA168/NC_000015 Error: New database 'IMGT/GENE-DB' found. Add it to the rs_id.json file and/or Identifiers.org. Features: {"assembly_gap":10,"exon":146,"misc_RNA":454,"mRNA":2005,"CDS":2005,"precursor_RNA":56,"ncRNA":160,"tRNA":9} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 15.81s user 0.99s system 99% cpu 16.841 total human.gb/9606/PRJNA168/NC_000016 Error: New database 'IMGT/GENE-DB' found. Add it to the rs_id.json file and/or Identifiers.org. Features: {"assembly_gap":10,"exon":189,"misc_RNA":471,"mRNA":2720,"CDS":2723,"precursor_RNA":47,"ncRNA":77,"tRNA":27,"V_segment":3} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 16.29s user 0.94s system 99% cpu 17.288 total human.gb/9606/PRJNA168/NC_000017 Features: {"assembly_gap":5,"mRNA":3743,"CDS":3743,"misc_RNA":633,"exon":150,"precursor_RNA":82,"ncRNA":152,"tRNA":34} ruby insdc2ttl.rb -d refseq $i > work/$base.ttl 22.51s user 1.04s system 99% cpu 23.671 total total_sec = 48.583 + 45.251 + 31.236 + 23.279 + 20.183 + 23.809 + 20.788 + 19.137 + 19.403 + 20.550 + 26.353 + 23.337 + 10.576 + 17.449 + 16.841 + 17.288 + 23.671 + 8.780 + 26.110 + 10.435 + 5.629 + 9.908 + 18.440 + 4.391 puts total_sec / 60 # ==> 8.190450000000002 min