http://togogenome.org/gene/1313172:YM304_RS19510 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBU3 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the adenylosuccinate synthetase family.|||Binds 1 Mg(2+) ion per subunit.|||Cytoplasm|||Homodimer.|||Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP. http://togogenome.org/gene/1313172:YM304_RS00235 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1E2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS04450 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7K7 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the P-Pant transferase superfamily. AcpS family.|||Cytoplasm|||Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein. http://togogenome.org/gene/1313172:YM304_RS18280 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC52 ^@ Similarity ^@ Belongs to the ACC deaminase/D-cysteine desulfhydrase family. http://togogenome.org/gene/1313172:YM304_RS16920 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGG1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the LemA family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS21845 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA19 ^@ Cofactor|||Similarity ^@ Belongs to the ApbE family.|||Magnesium. Can also use manganese. http://togogenome.org/gene/1313172:YM304_RS16190 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAP4 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. Thiolase family. http://togogenome.org/gene/1313172:YM304_RS05065 ^@ http://purl.uniprot.org/uniprot/A0A6C7DYG6 ^@ Similarity ^@ Belongs to the P(II) protein family. http://togogenome.org/gene/1313172:YM304_RS04270 ^@ http://purl.uniprot.org/uniprot/A0A6C7E389 ^@ Similarity ^@ Belongs to the 2-oxoacid dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS10205 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEE5 ^@ Function|||Similarity ^@ Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.|||Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily.|||Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines. http://togogenome.org/gene/1313172:YM304_RS09790 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8C2 ^@ Function|||Similarity ^@ Belongs to the pseudouridine synthase RluA family.|||Responsible for synthesis of pseudouridine from uracil. http://togogenome.org/gene/1313172:YM304_RS00570 ^@ http://purl.uniprot.org/uniprot/A0A6C7E742 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS04310 ^@ http://purl.uniprot.org/uniprot/A0A6C7E343 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS05935 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8H4 ^@ Similarity ^@ Belongs to the AHA1 family. http://togogenome.org/gene/1313172:YM304_RS17710 ^@ http://purl.uniprot.org/uniprot/A0A6C7EIP8 ^@ Similarity ^@ Belongs to the group II decarboxylase family. http://togogenome.org/gene/1313172:YM304_RS09240 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6S4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the bacterial ribosomal protein bL21 family.|||Part of the 50S ribosomal subunit. Contacts protein L20.|||This protein binds to 23S rRNA in the presence of protein L20. http://togogenome.org/gene/1313172:YM304_RS18795 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8T0 ^@ Similarity ^@ Belongs to the iron/ascorbate-dependent oxidoreductase family. http://togogenome.org/gene/1313172:YM304_RS08500 ^@ http://purl.uniprot.org/uniprot/A0A6C7E582 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS04325 ^@ http://purl.uniprot.org/uniprot/A0A6C7DXR5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS10785 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB90 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS21680 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZD8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS04390 ^@ http://purl.uniprot.org/uniprot/A0A6C7E258 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS11 family.|||Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.|||Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to IF-3. http://togogenome.org/gene/1313172:YM304_RS04730 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2F0 ^@ Similarity ^@ Belongs to the LytR/CpsA/Psr (LCP) family. http://togogenome.org/gene/1313172:YM304_RS19070 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECB7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the CPA3 antiporters (TC 2.A.63) subunit E family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS05790 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4C0 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CobS family.|||Cell membrane|||Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate.|||Membrane http://togogenome.org/gene/1313172:YM304_RS10330 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7C4 ^@ Function|||Similarity ^@ Belongs to the bacterial ribosomal protein bL20 family.|||Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. http://togogenome.org/gene/1313172:YM304_RS14210 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGQ3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ABC transporter superfamily.|||Cell membrane|||Homodimer. Forms a membrane-associated complex with FtsX.|||Part of the ABC transporter FtsEX involved in cellular division. http://togogenome.org/gene/1313172:YM304_RS03485 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8T3 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS16780 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB06 ^@ Similarity ^@ Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. http://togogenome.org/gene/1313172:YM304_RS22895 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA87 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS14270 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEW4 ^@ Similarity ^@ Belongs to the universal stress protein A family. http://togogenome.org/gene/1313172:YM304_RS04215 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4N0 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS14 family. Zinc-binding uS14 subfamily.|||Binds 1 zinc ion per subunit.|||Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.|||Part of the 30S ribosomal subunit. Contacts proteins S3 and S10. http://togogenome.org/gene/1313172:YM304_RS24710 ^@ http://purl.uniprot.org/uniprot/A0A6C7E746 ^@ Caution ^@ Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS22975 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAP5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS22980 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBQ2 ^@ Similarity ^@ Belongs to the LytR/CpsA/Psr (LCP) family. http://togogenome.org/gene/1313172:YM304_RS01745 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7T1 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.|||Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.|||Monomer.|||Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed. http://togogenome.org/gene/1313172:YM304_RS03960 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2S6 ^@ Similarity ^@ Belongs to the bacterial ribosomal protein bL33 family. http://togogenome.org/gene/1313172:YM304_RS17130 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB76 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS10615 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBD2 ^@ Cofactor|||Similarity ^@ Belongs to the monomeric-type IDH family.|||Binds 1 Mg(2+) or Mn(2+) ion per subunit. http://togogenome.org/gene/1313172:YM304_RS04230 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7L3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL18 family.|||Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S and 23S rRNAs.|||This is one of the proteins that bind and probably mediate the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. http://togogenome.org/gene/1313172:YM304_RS17515 ^@ http://purl.uniprot.org/uniprot/A0A6C7EIK8 ^@ Similarity ^@ Belongs to the 5'(3')-deoxyribonucleotidase family. http://togogenome.org/gene/1313172:YM304_RS19645 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9B2 ^@ Function|||Induction|||Similarity ^@ Acts as a chaperone.|||Belongs to the heat shock protein 70 family.|||By stress conditions e.g. heat shock. http://togogenome.org/gene/1313172:YM304_RS02100 ^@ http://purl.uniprot.org/uniprot/A0A6C7E691 ^@ Similarity ^@ Belongs to the complex I 51 kDa subunit family. http://togogenome.org/gene/1313172:YM304_RS08015 ^@ http://purl.uniprot.org/uniprot/A0A6C7E769 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RbfA family.|||Cytoplasm|||Monomer. Binds 30S ribosomal subunits, but not 50S ribosomal subunits or 70S ribosomes.|||One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. http://togogenome.org/gene/1313172:YM304_RS13105 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9A2 ^@ Similarity ^@ Belongs to the peptidase S13 family. http://togogenome.org/gene/1313172:YM304_RS21865 ^@ http://purl.uniprot.org/uniprot/A0A6C7E256 ^@ Similarity ^@ Belongs to the bacterial ring-hydroxylating dioxygenase beta subunit family. http://togogenome.org/gene/1313172:YM304_RS18275 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFL8 ^@ Similarity ^@ Belongs to the iron/ascorbate-dependent oxidoreductase family. http://togogenome.org/gene/1313172:YM304_RS00105 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4Z2 ^@ Similarity ^@ Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/1313172:YM304_RS05255 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5D0 ^@ Function|||Similarity ^@ Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.|||Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. http://togogenome.org/gene/1313172:YM304_RS23025 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBM0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS16625 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGA4 ^@ Similarity ^@ Belongs to the precorrin methyltransferase family. http://togogenome.org/gene/1313172:YM304_RS01190 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0Q7 ^@ Similarity ^@ Belongs to the glycosyl hydrolase 2 family. http://togogenome.org/gene/1313172:YM304_RS13420 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAF2 ^@ Cofactor|||Similarity ^@ Belongs to the class-II DAHP synthase family.|||Binds 1 divalent cation per subunit. The enzyme is active with manganese, cobalt or cadmium ions. http://togogenome.org/gene/1313172:YM304_RS03105 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8K6 ^@ Similarity ^@ Belongs to the leucine-binding protein family. http://togogenome.org/gene/1313172:YM304_RS05505 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4A7 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.|||Catalyzes the reversible phosphorylation of S-methyl-5'-thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.|||Homohexamer. Dimer of a homotrimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS03860 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4C4 ^@ Function|||PTM|||Similarity ^@ An intermediate of this reaction is the autophosphorylated ppk in which a phosphate is covalently linked to a histidine residue through a N-P bond.|||Belongs to the polyphosphate kinase 1 (PPK1) family.|||Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). http://togogenome.org/gene/1313172:YM304_RS03685 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAJ4 ^@ Similarity ^@ Belongs to the FPG family. http://togogenome.org/gene/1313172:YM304_RS14135 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9J9 ^@ Similarity ^@ Belongs to the histone deacetylase family. http://togogenome.org/gene/1313172:YM304_RS01445 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5M1 ^@ Function ^@ Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). http://togogenome.org/gene/1313172:YM304_RS10970 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBK1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the AzlC family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS05605 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4D7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS22720 ^@ http://purl.uniprot.org/uniprot/A0A6C7EF80 ^@ Cofactor|||Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation ^@ Belongs to the LipB family.|||Belongs to the radical SAM superfamily. Lipoyl synthase family.|||Binds 2 [4Fe-4S] clusters per subunit. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.|||Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.|||Cytoplasm|||In the reaction, the free carboxyl group of octanoic acid is attached via an amide linkage to the epsilon-amino group of a specific lysine residue of lipoyl domains of lipoate-dependent enzymes. http://togogenome.org/gene/1313172:YM304_RS05055 ^@ http://purl.uniprot.org/uniprot/A0A6C7E581 ^@ Similarity ^@ Belongs to the P(II) protein family. http://togogenome.org/gene/1313172:YM304_RS04205 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2Z9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL24 family.|||One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.|||One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/1313172:YM304_RS08655 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9Z8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peptidase S14 family.|||Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.|||Cytoplasm|||Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes. http://togogenome.org/gene/1313172:YM304_RS05185 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9Q3 ^@ Similarity ^@ Belongs to the homoserine dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS16385 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAT2 ^@ Similarity ^@ Belongs to the zinc-containing alcohol dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS00620 ^@ http://purl.uniprot.org/uniprot/A0A6C7E757 ^@ Function|||Similarity ^@ Belongs to the PINc/VapC protein family.|||Toxic component of a toxin-antitoxin (TA) system. An RNase. http://togogenome.org/gene/1313172:YM304_RS09610 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAT4 ^@ Similarity ^@ Belongs to the FGGY kinase family. http://togogenome.org/gene/1313172:YM304_RS10820 ^@ http://purl.uniprot.org/uniprot/A0A6C7EES1 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the UvrC family.|||Cytoplasm|||Interacts with UvrB in an incision complex.|||The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. http://togogenome.org/gene/1313172:YM304_RS17440 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECR6 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS03190 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA81 ^@ Similarity ^@ Belongs to the UPF0337 (CsbD) family. http://togogenome.org/gene/1313172:YM304_RS15965 ^@ http://purl.uniprot.org/uniprot/A0A6C7EHP4 ^@ Similarity ^@ Belongs to the BlaI transcriptional regulatory family. http://togogenome.org/gene/1313172:YM304_RS22215 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5T7 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the RimP family.|||Cytoplasm|||Required for maturation of 30S ribosomal subunits. http://togogenome.org/gene/1313172:YM304_RS03570 ^@ http://purl.uniprot.org/uniprot/A0A6C7DX08 ^@ Function|||Similarity|||Subunit ^@ Belongs to the type-II 3-dehydroquinase family.|||Catalyzes a trans-dehydration via an enolate intermediate.|||Homododecamer. http://togogenome.org/gene/1313172:YM304_RS23155 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGK6 ^@ Subcellular Location Annotation ^@ Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS00745 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1R9 ^@ Subunit ^@ Homodimer. http://togogenome.org/gene/1313172:YM304_RS01205 ^@ http://purl.uniprot.org/uniprot/A0A6C7E933 ^@ Similarity ^@ Belongs to the band 7/mec-2 family. http://togogenome.org/gene/1313172:YM304_RS20745 ^@ http://purl.uniprot.org/uniprot/A0A6C7EIT2 ^@ Similarity ^@ Belongs to the phosphate/phosphite/phosphonate binding protein family. http://togogenome.org/gene/1313172:YM304_RS10095 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2T1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS07245 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAU4 ^@ Similarity ^@ Belongs to the DegT/DnrJ/EryC1 family. http://togogenome.org/gene/1313172:YM304_RS14880 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA72 ^@ Cofactor|||Miscellaneous|||Similarity ^@ Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.|||Binds 1 FAD per subunit.|||The active site is a redox-active disulfide bond. http://togogenome.org/gene/1313172:YM304_RS04355 ^@ http://purl.uniprot.org/uniprot/A0A6C7E347 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/1313172:YM304_RS03275 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2C6 ^@ Function|||Similarity ^@ Belongs to the MsrA Met sulfoxide reductase family.|||Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. http://togogenome.org/gene/1313172:YM304_RS20895 ^@ http://purl.uniprot.org/uniprot/A0A6C7EIW1 ^@ Similarity ^@ Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/1313172:YM304_RS13765 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEJ9 ^@ Caution|||Function|||Similarity ^@ Belongs to the DXR family.|||Catalyzes the NADPH-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP).|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS23325 ^@ http://purl.uniprot.org/uniprot/A0A6C7EIX3 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS21485 ^@ http://purl.uniprot.org/uniprot/A0A6C7EKY2 ^@ Similarity ^@ Belongs to the thioredoxin family. http://togogenome.org/gene/1313172:YM304_RS13295 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEB0 ^@ Similarity ^@ In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/1313172:YM304_RS05570 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBN0 ^@ Similarity ^@ Belongs to the phosphohexose mutase family. http://togogenome.org/gene/1313172:YM304_RS17550 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBW7 ^@ Similarity ^@ Belongs to the zinc-containing alcohol dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS17600 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBY1 ^@ Similarity ^@ Belongs to the precorrin methyltransferase family. http://togogenome.org/gene/1313172:YM304_RS16270 ^@ http://purl.uniprot.org/uniprot/A0A6C7EG43 ^@ Similarity ^@ Belongs to the peptidase C56 family. http://togogenome.org/gene/1313172:YM304_RS18970 ^@ http://purl.uniprot.org/uniprot/A0A6C7EG04 ^@ Domain|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Belongs to the glutamyl-tRNA reductase family.|||Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).|||During catalysis, the active site Cys acts as a nucleophile attacking the alpha-carbonyl group of tRNA-bound glutamate with the formation of a thioester intermediate between enzyme and glutamate, and the concomitant release of tRNA(Glu). The thioester intermediate is finally reduced by direct hydride transfer from NADPH, to form the product GSA.|||Homodimer.|||Possesses an unusual extended V-shaped dimeric structure with each monomer consisting of three distinct domains arranged along a curved 'spinal' alpha-helix. The N-terminal catalytic domain specifically recognizes the glutamate moiety of the substrate. The second domain is the NADPH-binding domain, and the third C-terminal domain is responsible for dimerization. http://togogenome.org/gene/1313172:YM304_RS00775 ^@ http://purl.uniprot.org/uniprot/A0A6C7E787 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS11910 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9J5 ^@ Similarity ^@ Belongs to the lycopene cyclase family. http://togogenome.org/gene/1313172:YM304_RS05710 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZ74 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS22820 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9V0 ^@ Cofactor|||Similarity ^@ Belongs to the peptidase M48 family.|||Binds 1 zinc ion per subunit. http://togogenome.org/gene/1313172:YM304_RS08070 ^@ http://purl.uniprot.org/uniprot/A0A6C7E665 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the DapB family.|||Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.|||Cytoplasm|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Was originally thought to be a dihydrodipicolinate reductase (DHDPR), catalyzing the conversion of dihydrodipicolinate to tetrahydrodipicolinate. However, it was shown in E.coli that the substrate of the enzymatic reaction is not dihydrodipicolinate (DHDP) but in fact (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinic acid (HTPA), the product released by the DapA-catalyzed reaction. http://togogenome.org/gene/1313172:YM304_RS19040 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8Y1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS21395 ^@ http://purl.uniprot.org/uniprot/A0A6C7EJ79 ^@ Function|||Similarity ^@ Belongs to the bacterial ribosomal protein bS6 family.|||Binds together with bS18 to 16S ribosomal RNA. http://togogenome.org/gene/1313172:YM304_RS04515 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3G6 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the Maf family. YhdE subfamily.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. http://togogenome.org/gene/1313172:YM304_RS13155 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9C0 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the transaldolase family. Type 2 subfamily.|||Cytoplasm|||Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. http://togogenome.org/gene/1313172:YM304_RS08215 ^@ http://purl.uniprot.org/uniprot/A0A6C7E698 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the DapA family.|||Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).|||Cytoplasm|||Homotetramer; dimer of dimers.|||Was originally thought to be a dihydrodipicolinate synthase (DHDPS), catalyzing the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to dihydrodipicolinate (DHDP). However, it was shown in E.coli that the product of the enzymatic reaction is not dihydrodipicolinate but in fact (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid (HTPA), and that the consecutive dehydration reaction leading to DHDP is not spontaneous but catalyzed by DapB. http://togogenome.org/gene/1313172:YM304_RS08855 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA36 ^@ Similarity ^@ Belongs to the zinc-containing alcohol dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS04225 ^@ http://purl.uniprot.org/uniprot/A0A6C7DXP1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL6 family.|||Part of the 50S ribosomal subunit.|||This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center. http://togogenome.org/gene/1313172:YM304_RS07440 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECQ0 ^@ Similarity ^@ Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily. http://togogenome.org/gene/1313172:YM304_RS14605 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGY5 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the peptidase M17 family.|||Binds 2 manganese ions per subunit.|||Cytoplasm|||Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides. http://togogenome.org/gene/1313172:YM304_RS06370 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3M8 ^@ Function ^@ Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. http://togogenome.org/gene/1313172:YM304_RS04185 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAU9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL16 family.|||Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/1313172:YM304_RS13900 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5P4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the RNase PH family.|||Homohexameric ring arranged as a trimer of dimers.|||Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. http://togogenome.org/gene/1313172:YM304_RS09245 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6P4 ^@ Similarity ^@ Belongs to the bacterial ribosomal protein bL27 family. http://togogenome.org/gene/1313172:YM304_RS09195 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6R2 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the FtsA/MreB family.|||Cytoplasm|||Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature.|||Forms polymers. http://togogenome.org/gene/1313172:YM304_RS16800 ^@ http://purl.uniprot.org/uniprot/A0A6C7EF55 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS13315 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAC8 ^@ Caution|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS03870 ^@ http://purl.uniprot.org/uniprot/A0A6C7DXC8 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.|||Cell membrane|||Membrane|||Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane. http://togogenome.org/gene/1313172:YM304_RS09980 ^@ http://purl.uniprot.org/uniprot/A0A6C7E784 ^@ Function|||Similarity ^@ Belongs to the relA/spoT family.|||In eubacteria ppGpp (guanosine 3'-diphosphate 5'-diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. http://togogenome.org/gene/1313172:YM304_RS12040 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7K3 ^@ Caution|||Function|||Similarity ^@ Belongs to the class I-like SAM-binding methyltransferase superfamily. MenG/UbiE family.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). http://togogenome.org/gene/1313172:YM304_RS09290 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6T5 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Belongs to the Nth/MutY family.|||Binds 1 [4Fe-4S] cluster.|||DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS18565 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFS9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS12895 ^@ http://purl.uniprot.org/uniprot/A0A6C7EE34 ^@ Similarity ^@ Belongs to the GcvT family. http://togogenome.org/gene/1313172:YM304_RS08160 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7A2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the drug/metabolite transporter (DMT) superfamily. Small multidrug resistance (SMR) (TC 2.A.7.1) family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS10840 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7S1 ^@ Caution ^@ Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS00305 ^@ http://purl.uniprot.org/uniprot/A0A6C7DYJ2 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS17855 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFT0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I subunit 1 family.|||Cell membrane|||Membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. http://togogenome.org/gene/1313172:YM304_RS14345 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA08 ^@ Caution|||Function|||Similarity ^@ Belongs to the NAD(P)-dependent epimerase/dehydratase family. GDP-mannose 4,6-dehydratase subfamily.|||Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS06105 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4S8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS07500 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9C1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS02505 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9T2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the MIP/aquaporin (TC 1.A.8) family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS01350 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0U3 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the cytidine and deoxycytidylate deaminase family.|||Binds 1 zinc ion per subunit.|||Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2).|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS10815 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBH2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS10660 ^@ http://purl.uniprot.org/uniprot/A0A6C7E379 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. http://togogenome.org/gene/1313172:YM304_RS04690 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7R4 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the uroporphyrinogen decarboxylase family.|||Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS10990 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBC6 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the peptidase M32 family.|||Binds 1 zinc ion per subunit.|||Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. http://togogenome.org/gene/1313172:YM304_RS18355 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB54 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS05310 ^@ http://purl.uniprot.org/uniprot/A0A6C7E448 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the ATPase A chain family.|||Cell membrane|||Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.|||Membrane http://togogenome.org/gene/1313172:YM304_RS20670 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDP8 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/1313172:YM304_RS00245 ^@ http://purl.uniprot.org/uniprot/A0A6C7DTP0 ^@ Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family. http://togogenome.org/gene/1313172:YM304_RS12120 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4E7 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the UPP synthase family.|||Binds 2 magnesium ions per subunit.|||Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS09785 ^@ http://purl.uniprot.org/uniprot/A0A6C7E712 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the peptidase A8 family.|||Cell membrane|||Lacks conserved residue(s) required for the propagation of feature annotation.|||This protein specifically catalyzes the removal of signal peptides from prolipoproteins. http://togogenome.org/gene/1313172:YM304_RS09910 ^@ http://purl.uniprot.org/uniprot/A0A6C7EE98 ^@ Function|||Similarity|||Subunit ^@ Belongs to the PdxS/SNZ family.|||Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively.|||In the presence of PdxT, forms a dodecamer of heterodimers. http://togogenome.org/gene/1313172:YM304_RS00005 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4X3 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the DnaA family.|||Cytoplasm|||Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. http://togogenome.org/gene/1313172:YM304_RS06760 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6D2 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. Thiolase family. http://togogenome.org/gene/1313172:YM304_RS09165 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1Z6 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the FKBP-type PPIase family. Tig subfamily.|||Consists of 3 domains; the N-terminus binds the ribosome, the middle domain has PPIase activity, while the C-terminus has intrinsic chaperone activity on its own.|||Cytoplasm|||Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase. http://togogenome.org/gene/1313172:YM304_RS17505 ^@ http://purl.uniprot.org/uniprot/A0A6C7E819 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS02485 ^@ http://purl.uniprot.org/uniprot/A0A6C7E357 ^@ Similarity ^@ Belongs to the glycerate kinase type-1 family. http://togogenome.org/gene/1313172:YM304_RS04540 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9D7 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the FtsA/MreB family.|||Cytoplasm|||Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature.|||Forms polymers. http://togogenome.org/gene/1313172:YM304_RS15770 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9R2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS15885 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAR9 ^@ Similarity ^@ Belongs to the bacterial solute-binding protein 1 family. http://togogenome.org/gene/1313172:YM304_RS18195 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECA3 ^@ Similarity ^@ Belongs to the N(4)/N(6)-methyltransferase family. N(4) subfamily. http://togogenome.org/gene/1313172:YM304_RS16375 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEH6 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS20730 ^@ http://purl.uniprot.org/uniprot/A0A6C7EHJ5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.|||Membrane http://togogenome.org/gene/1313172:YM304_RS02725 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6G6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS21375 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA78 ^@ Function|||Similarity ^@ Belongs to the helicase family. DnaB subfamily.|||Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. http://togogenome.org/gene/1313172:YM304_RS12520 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4R3 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the EPSP synthase family.|||Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. http://togogenome.org/gene/1313172:YM304_RS23195 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGC4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS00460 ^@ http://purl.uniprot.org/uniprot/A0A6C7E719 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the UPF0014 family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS25445 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGX6 ^@ Function|||Similarity ^@ Belongs to the cytidine and deoxycytidylate deaminase family.|||This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis. http://togogenome.org/gene/1313172:YM304_RS06950 ^@ http://purl.uniprot.org/uniprot/A0A6C7E559 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the MscL family.|||Cell membrane|||Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.|||Homopentamer.|||Membrane http://togogenome.org/gene/1313172:YM304_RS03900 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2Q9 ^@ Similarity ^@ Belongs to the PhoU family. http://togogenome.org/gene/1313172:YM304_RS17110 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAG7 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS17755 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFQ7 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/1313172:YM304_RS18350 ^@ http://purl.uniprot.org/uniprot/A0A6C7EJ29 ^@ Similarity ^@ Belongs to the formate--tetrahydrofolate ligase family. http://togogenome.org/gene/1313172:YM304_RS11870 ^@ http://purl.uniprot.org/uniprot/A0A6C7E468 ^@ Similarity ^@ Belongs to the SAICAR synthetase family. http://togogenome.org/gene/1313172:YM304_RS04335 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAY2 ^@ Similarity ^@ Belongs to the zinc-containing alcohol dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS03425 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAE2 ^@ Similarity ^@ Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS08055 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5Z7 ^@ Similarity ^@ Belongs to the ribF family. http://togogenome.org/gene/1313172:YM304_RS09965 ^@ http://purl.uniprot.org/uniprot/A0A6C7E692 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SecD/SecF family. SecD subfamily.|||Cell membrane|||Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane|||Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. http://togogenome.org/gene/1313172:YM304_RS18885 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDM3 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the tRNA(Ile)-lysidine synthase family.|||Cytoplasm|||Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine.|||The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a P-loop motif involved in ATP binding. http://togogenome.org/gene/1313172:YM304_RS21660 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5J9 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peptidase S16 family.|||Cytoplasm|||Homohexamer. Organized in a ring with a central cavity. http://togogenome.org/gene/1313172:YM304_RS08385 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA17 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS01730 ^@ http://purl.uniprot.org/uniprot/A0A6C7E616 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the prokaryotic pantothenate kinase family.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS02110 ^@ http://purl.uniprot.org/uniprot/A0A6C7E054 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I subunit 1 family.|||Cell membrane|||Membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. http://togogenome.org/gene/1313172:YM304_RS00110 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8H7 ^@ Similarity ^@ Belongs to the oxygen-dependent FAD-linked oxidoreductase family. http://togogenome.org/gene/1313172:YM304_RS07625 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0Q9 ^@ Similarity ^@ Belongs to the group II decarboxylase family. http://togogenome.org/gene/1313172:YM304_RS14265 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8W6 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the adenosylhomocysteinase family.|||Binds 1 NAD(+) per subunit.|||Cytoplasm|||May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. http://togogenome.org/gene/1313172:YM304_RS12155 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8F0 ^@ Similarity ^@ Belongs to the TrpC family. http://togogenome.org/gene/1313172:YM304_RS15525 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFL0 ^@ Similarity ^@ Belongs to the complex I 51 kDa subunit family. http://togogenome.org/gene/1313172:YM304_RS19680 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECQ2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS20080 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED78 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/1313172:YM304_RS07680 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9L4 ^@ Similarity ^@ Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS13035 ^@ http://purl.uniprot.org/uniprot/A0A6C7EE63 ^@ Similarity ^@ Belongs to the peptidase T1A family. http://togogenome.org/gene/1313172:YM304_RS09915 ^@ http://purl.uniprot.org/uniprot/A0A6C7E680 ^@ Function|||Similarity|||Subunit ^@ Belongs to the glutaminase PdxT/SNO family.|||Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.|||In the presence of PdxS, forms a dodecamer of heterodimers. Only shows activity in the heterodimer. http://togogenome.org/gene/1313172:YM304_RS10955 ^@ http://purl.uniprot.org/uniprot/A0A6C7E910 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS12780 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFW5 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the IspH family.|||Binds 1 [4Fe-4S] cluster per subunit.|||Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. http://togogenome.org/gene/1313172:YM304_RS15050 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBD6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ABC-2 integral membrane protein family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS19870 ^@ http://purl.uniprot.org/uniprot/A0A6C7EJZ6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the NlpA lipoprotein family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS07085 ^@ http://purl.uniprot.org/uniprot/A0A6C7E482 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the cytochrome ubiquinol oxidase subunit 1 family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS23115 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECC2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the DnaX/STICHEL family.|||DNA polymerase III contains a core (composed of alpha, epsilon and theta chains) that associates with a tau subunit. This core dimerizes to form the POLIII' complex. PolIII' associates with the gamma complex (composed of gamma, delta, delta', psi and chi chains) and with the beta chain to form the complete DNA polymerase III complex.|||DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. http://togogenome.org/gene/1313172:YM304_RS07660 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5L3 ^@ Similarity ^@ Belongs to the band 7/mec-2 family. Flotillin subfamily. http://togogenome.org/gene/1313172:YM304_RS01010 ^@ http://purl.uniprot.org/uniprot/A0A6C7E900 ^@ Similarity ^@ Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/1313172:YM304_RS08020 ^@ http://purl.uniprot.org/uniprot/A0A6C7E653 ^@ Function|||Similarity ^@ Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.|||Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs. http://togogenome.org/gene/1313172:YM304_RS20850 ^@ http://purl.uniprot.org/uniprot/A0A6C7EH53 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ABC-2 integral membrane protein family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS04170 ^@ http://purl.uniprot.org/uniprot/A0A6C7E359 ^@ Function|||Similarity ^@ Belongs to the universal ribosomal protein uS19 family.|||Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. http://togogenome.org/gene/1313172:YM304_RS12855 ^@ http://purl.uniprot.org/uniprot/A0A6C7E901 ^@ Similarity ^@ Belongs to the SOS response-associated peptidase family. http://togogenome.org/gene/1313172:YM304_RS12150 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8K3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family.|||Catalyzes the attachment of glycine to tRNA(Gly).|||Cytoplasm|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS12710 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA12 ^@ Similarity ^@ Belongs to the creatininase superfamily. http://togogenome.org/gene/1313172:YM304_RS19380 ^@ http://purl.uniprot.org/uniprot/A0A6C7E952 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the cytochrome c oxidase subunit 3 family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS00560 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8Q9 ^@ Subcellular Location Annotation ^@ Cytoplasm http://togogenome.org/gene/1313172:YM304_RS10210 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6F1 ^@ Similarity ^@ Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. http://togogenome.org/gene/1313172:YM304_RS10390 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7P7 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.|||Catalyzes the NADPH-dependent reduction of N-acetyl-5-glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS19515 ^@ http://purl.uniprot.org/uniprot/A0A6C7EI37 ^@ Similarity ^@ Belongs to the sulfatase family. http://togogenome.org/gene/1313172:YM304_RS06045 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4I6 ^@ Cofactor|||Similarity ^@ Belongs to the MsrB Met sulfoxide reductase family.|||Binds 1 zinc ion per subunit. The zinc ion is important for the structural integrity of the protein. http://togogenome.org/gene/1313172:YM304_RS12725 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECJ7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS07730 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9M8 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. Thiolase family. http://togogenome.org/gene/1313172:YM304_RS17745 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC13 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GroES chaperonin family.|||Cytoplasm|||Heptamer of 7 subunits arranged in a ring. Interacts with the chaperonin GroEL.|||Together with the chaperonin GroEL, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. GroES binds to the apical surface of the GroEL ring, thereby capping the opening of the GroEL channel. http://togogenome.org/gene/1313172:YM304_RS08845 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDK7 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS07725 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0T6 ^@ Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. http://togogenome.org/gene/1313172:YM304_RS15185 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDS8 ^@ Similarity|||Subunit ^@ Belongs to the NAD(P)-dependent epimerase/dehydratase family.|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS01500 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5N1 ^@ Similarity ^@ Belongs to the inositol monophosphatase superfamily. http://togogenome.org/gene/1313172:YM304_RS03025 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3M9 ^@ Similarity ^@ Belongs to the sulfatase family. http://togogenome.org/gene/1313172:YM304_RS08660 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6D6 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peptidase S14 family.|||Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.|||Cytoplasm|||Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes. http://togogenome.org/gene/1313172:YM304_RS11345 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBJ9 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the HisA/HisF family.|||Cytoplasm|||Heterodimer of HisH and HisF.|||IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. http://togogenome.org/gene/1313172:YM304_RS06465 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC73 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the FAD-dependent oxidoreductase 2 family. NadB subfamily.|||Catalyzes the oxidation of L-aspartate to iminoaspartate, the first step in the de novo biosynthesis of NAD(+).|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS11305 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7W6 ^@ Caution|||Cofactor|||Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation ^@ Belongs to the radical SAM superfamily. RlmN family.|||Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Reaction proceeds by a ping-pong mechanism involving intermediate methylation of a conserved cysteine residue.|||Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. http://togogenome.org/gene/1313172:YM304_RS16880 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB24 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the IlvD/Edd family.|||Binds 1 [2Fe-2S] cluster per subunit. This cluster acts as a Lewis acid cofactor.|||Functions in the biosynthesis of branched-chain amino acids. Catalyzes the dehydration of (2R,3R)-2,3-dihydroxy-3-methylpentanoate (2,3-dihydroxy-3-methylvalerate) into 2-oxo-3-methylpentanoate (2-oxo-3-methylvalerate) and of (2R)-2,3-dihydroxy-3-methylbutanoate (2,3-dihydroxyisovalerate) into 2-oxo-3-methylbutanoate (2-oxoisovalerate), the penultimate precursor to L-isoleucine and L-valine, respectively.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS12870 ^@ http://purl.uniprot.org/uniprot/A0A6C7E944 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the GcvH family.|||Binds 1 lipoyl cofactor covalently.|||The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.|||The glycine cleavage system is composed of four proteins: P, T, L and H. http://togogenome.org/gene/1313172:YM304_RS25595 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBJ1 ^@ Function|||Similarity ^@ Belongs to the cyclophilin-type PPIase family.|||PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. http://togogenome.org/gene/1313172:YM304_RS19155 ^@ http://purl.uniprot.org/uniprot/A0A6C7EHV9 ^@ Similarity ^@ Belongs to the Nudix hydrolase family. http://togogenome.org/gene/1313172:YM304_RS10055 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEB7 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the SUA5 family.|||Cytoplasm|||Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. http://togogenome.org/gene/1313172:YM304_RS02120 ^@ http://purl.uniprot.org/uniprot/A0A6C7E625 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the complex I subunit 6 family.|||Cell membrane|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/1313172:YM304_RS09090 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDS0 ^@ Similarity ^@ Belongs to the DODA-type extradiol aromatic ring-opening dioxygenase family. http://togogenome.org/gene/1313172:YM304_RS14630 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9V1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS09190 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAB0 ^@ Similarity ^@ Belongs to the NDK family. http://togogenome.org/gene/1313172:YM304_RS05775 ^@ http://purl.uniprot.org/uniprot/A0A6C7E365 ^@ Similarity ^@ Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. http://togogenome.org/gene/1313172:YM304_RS04675 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB62 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CN hydrolase family. Apolipoprotein N-acyltransferase subfamily.|||Catalyzes the phospholipid dependent N-acylation of the N-terminal cysteine of apolipoprotein, the last step in lipoprotein maturation.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS16605 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7H6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.|||Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.|||This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. http://togogenome.org/gene/1313172:YM304_RS14420 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEZ0 ^@ Similarity ^@ Belongs to the LytR/CpsA/Psr (LCP) family. http://togogenome.org/gene/1313172:YM304_RS01525 ^@ http://purl.uniprot.org/uniprot/A0A6C7DUW4 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS11510 ^@ http://purl.uniprot.org/uniprot/A0A6C7E861 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.|||Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS05420 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8B8 ^@ Function|||Similarity ^@ Belongs to the glycogen phosphorylase family.|||Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. http://togogenome.org/gene/1313172:YM304_RS03085 ^@ http://purl.uniprot.org/uniprot/A0A6C7DWI0 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/1313172:YM304_RS08915 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6G0 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS09095 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5N0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS17340 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBT2 ^@ Similarity ^@ Belongs to the glutamate synthase family. http://togogenome.org/gene/1313172:YM304_RS12525 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECF8 ^@ Similarity ^@ Belongs to the HAD-like hydrolase superfamily. SerB family. http://togogenome.org/gene/1313172:YM304_RS06305 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4Y6 ^@ Function|||Similarity ^@ Belongs to the NAD-dependent DNA ligase family. LigA subfamily.|||DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. http://togogenome.org/gene/1313172:YM304_RS03250 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8N2 ^@ Cofactor|||Similarity ^@ Belongs to the carotenoid oxygenase family.|||Binds 1 Fe(2+) ion per subunit. http://togogenome.org/gene/1313172:YM304_RS02130 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1F4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS21765 ^@ http://purl.uniprot.org/uniprot/A0A6C7E035 ^@ Function ^@ Iron-sulfur subunit of the cytochrome bc1 complex, an essential component of the respiratory electron transport chain required for ATP synthesis. The bc1 complex catalyzes the oxidation of menaquinol and the reduction of cytochrome c in the respiratory chain. The bc1 complex operates through a Q-cycle mechanism that couples electron transfer to generation of the proton gradient that drives ATP synthesis. http://togogenome.org/gene/1313172:YM304_RS17870 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFD1 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I subunit 3 family.|||Cell membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/1313172:YM304_RS01675 ^@ http://purl.uniprot.org/uniprot/A0A6C7DV18 ^@ Similarity ^@ Belongs to the YciI family. http://togogenome.org/gene/1313172:YM304_RS18530 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDE4 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/1313172:YM304_RS15620 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9N4 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ABC-2 integral membrane protein family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS09395 ^@ http://purl.uniprot.org/uniprot/A0A6C7E833 ^@ Similarity ^@ Belongs to the UPF0102 family. http://togogenome.org/gene/1313172:YM304_RS02075 ^@ http://purl.uniprot.org/uniprot/A0A6C7E183 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the complex I subunit 3 family.|||Cell membrane|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. http://togogenome.org/gene/1313172:YM304_RS12130 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFI8 ^@ Function|||Similarity ^@ Belongs to the RecO family.|||Involved in DNA repair and RecF pathway recombination. http://togogenome.org/gene/1313172:YM304_RS13075 ^@ http://purl.uniprot.org/uniprot/A0A6C7EG08 ^@ Function|||Similarity|||Subunit ^@ Belongs to the class I-like SAM-binding methyltransferase superfamily. TRM61 family.|||Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.|||Homotetramer composed of a dimer of dimers. http://togogenome.org/gene/1313172:YM304_RS17185 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB89 ^@ Similarity ^@ Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.|||Belongs to the peroxiredoxin family. Prx6 subfamily. http://togogenome.org/gene/1313172:YM304_RS05530 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9X0 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the radical SAM superfamily. MoaA family.|||Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine and 1 [4Fe-4S] cluster coordinated with 3 cysteines and the GTP-derived substrate.|||Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate.|||Monomer and homodimer. http://togogenome.org/gene/1313172:YM304_RS16555 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7G6 ^@ Similarity ^@ Belongs to the HAD-like hydrolase superfamily. SerB family. http://togogenome.org/gene/1313172:YM304_RS05745 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4A6 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/1313172:YM304_RS21465 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFA7 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS06430 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8S2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the LeuD family. LeuD type 1 subfamily.|||Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.|||Heterodimer of LeuC and LeuD. http://togogenome.org/gene/1313172:YM304_RS18290 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED90 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS17175 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEY9 ^@ Similarity ^@ Belongs to the F420H(2)-dependent quinone reductase family. http://togogenome.org/gene/1313172:YM304_RS23395 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2U1 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SecE/SEC61-gamma family.|||Cell membrane|||Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.|||Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. http://togogenome.org/gene/1313172:YM304_RS15745 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBT1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the haloalkane dehalogenase family. Type 1 subfamily.|||Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons.|||Monomer. http://togogenome.org/gene/1313172:YM304_RS13180 ^@ http://purl.uniprot.org/uniprot/A0A6C7EE93 ^@ Similarity ^@ Belongs to the FPG family. http://togogenome.org/gene/1313172:YM304_RS19495 ^@ http://purl.uniprot.org/uniprot/A0A6C7E991 ^@ Similarity ^@ Belongs to the C/M/P thioester hydrolase family. http://togogenome.org/gene/1313172:YM304_RS18200 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8G1 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS14215 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8V7 ^@ Function|||PTM|||Similarity|||Subcellular Location Annotation ^@ Belongs to the prokaryotic/mitochondrial release factor family.|||Cytoplasm|||Methylated by PrmC. Methylation increases the termination efficiency of RF2.|||Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. http://togogenome.org/gene/1313172:YM304_RS14980 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFA4 ^@ Function ^@ Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). http://togogenome.org/gene/1313172:YM304_RS09465 ^@ http://purl.uniprot.org/uniprot/A0A6C7EE13 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.|||Homotetramer.|||Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS09350 ^@ http://purl.uniprot.org/uniprot/A0A6C7E714 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SMC family.|||Contains large globular domains required for ATP hydrolysis at each terminus and a third globular domain forming a flexible hinge near the middle of the molecule. These domains are separated by coiled-coil structures.|||Cytoplasm|||Homodimer.|||Required for chromosome condensation and partitioning. http://togogenome.org/gene/1313172:YM304_RS25695 ^@ http://purl.uniprot.org/uniprot/A0A6C7E998 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ClpA/ClpB family.|||Cytoplasm|||Homohexamer. The oligomerization is ATP-dependent. http://togogenome.org/gene/1313172:YM304_RS13995 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAR8 ^@ Similarity ^@ Belongs to the universal stress protein A family. http://togogenome.org/gene/1313172:YM304_RS04380 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7P5 ^@ Similarity ^@ Belongs to the bacterial ribosomal protein bL36 family. http://togogenome.org/gene/1313172:YM304_RS03200 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8M3 ^@ Similarity ^@ Belongs to the methylenetetrahydrofolate reductase family. http://togogenome.org/gene/1313172:YM304_RS05250 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3W5 ^@ Function|||PTM|||Similarity|||Subcellular Location Annotation ^@ Belongs to the prokaryotic/mitochondrial release factor family.|||Cytoplasm|||Methylated by PrmC. Methylation increases the termination efficiency of RF1.|||Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. http://togogenome.org/gene/1313172:YM304_RS12865 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA42 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the CDP-alcohol phosphatidyltransferase class-I family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS06140 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8L2 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS13535 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED09 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the diaminopimelate epimerase family.|||Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS10280 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7B5 ^@ Function|||Similarity ^@ Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus.|||Belongs to the Fmt family. http://togogenome.org/gene/1313172:YM304_RS01560 ^@ http://purl.uniprot.org/uniprot/A0A6C7E106 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the ferrochelatase family.|||Cytoplasm|||Involved in coproporphyrin-dependent heme b biosynthesis. Catalyzes the insertion of ferrous iron into coproporphyrin III to form Fe-coproporphyrin III.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS11365 ^@ http://purl.uniprot.org/uniprot/A0A6C7E894 ^@ Function|||Similarity|||Subunit ^@ Belongs to the GroES chaperonin family.|||Heptamer of 7 subunits arranged in a ring.|||Together with the chaperonin GroEL, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. GroES binds to the apical surface of the GroEL ring, thereby capping the opening of the GroEL channel. http://togogenome.org/gene/1313172:YM304_RS20955 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDP0 ^@ Cofactor ^@ Binds 1 zinc ion per subunit. http://togogenome.org/gene/1313172:YM304_RS14465 ^@ http://purl.uniprot.org/uniprot/A0A6C7EF04 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the type 2 tetrahydrodipicolinate N-succinyltransferase family.|||Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.|||Cytoplasm|||Homotrimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS02765 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8D7 ^@ Cofactor|||Similarity ^@ Belongs to the Fur family.|||Binds 1 Mn(2+) or Fe(2+) ion per subunit.|||Binds 1 zinc ion per subunit. http://togogenome.org/gene/1313172:YM304_RS06695 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8W8 ^@ Cofactor|||Similarity ^@ Belongs to the carotenoid oxygenase family.|||Binds 1 Fe(2+) ion per subunit. http://togogenome.org/gene/1313172:YM304_RS11750 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBT7 ^@ Similarity ^@ Belongs to the PspA/IM30 family. http://togogenome.org/gene/1313172:YM304_RS18615 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFU0 ^@ Function|||Similarity ^@ Belongs to the RecR family.|||May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. http://togogenome.org/gene/1313172:YM304_RS04800 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3I7 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS13530 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5F9 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.|||Cytoplasm|||GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.|||Monomer. Associates with the 50S ribosomal subunit. http://togogenome.org/gene/1313172:YM304_RS05295 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3W0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS06795 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8Y6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS16450 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEX6 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS18725 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC50 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the XseA family.|||Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.|||Cytoplasm|||Heterooligomer composed of large and small subunits. http://togogenome.org/gene/1313172:YM304_RS05855 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4K7 ^@ Caution|||Function|||Similarity ^@ Belongs to the glucose-6-phosphate dehydrogenase family.|||Catalyzes the oxidation of glucose 6-phosphate to 6-phosphogluconolactone.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS10215 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECJ8 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.|||Binds 2 Zn(2+) ions per subunit.|||Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. http://togogenome.org/gene/1313172:YM304_RS19875 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBZ6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS03980 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2Z2 ^@ Function|||PTM|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL11 family.|||Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.|||One or more lysine residues are methylated.|||Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex. http://togogenome.org/gene/1313172:YM304_RS17570 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAQ9 ^@ Similarity ^@ Belongs to the zinc-containing alcohol dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS01405 ^@ http://purl.uniprot.org/uniprot/A0A6C7E299 ^@ Similarity ^@ Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS09805 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAX4 ^@ Similarity|||Subunit ^@ Belongs to the Bpa family.|||Forms a homooligomeric, either hexameric or heptameric, ring-like structure which stacks co-axially with the proteasomal alpha-rings. http://togogenome.org/gene/1313172:YM304_RS03600 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2H6 ^@ Similarity ^@ Belongs to the DEAD box helicase family. http://togogenome.org/gene/1313172:YM304_RS05800 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5Q6 ^@ Function|||Similarity ^@ Belongs to the CobU/CobP family.|||Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. http://togogenome.org/gene/1313172:YM304_RS16950 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7Q3 ^@ Function|||Similarity|||Subunit ^@ Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).|||Belongs to the GatB/GatE family. GatB subfamily.|||Heterotrimer of A, B and C subunits. http://togogenome.org/gene/1313172:YM304_RS19640 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED36 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GrpE family.|||Cytoplasm|||Homodimer.|||Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. http://togogenome.org/gene/1313172:YM304_RS03055 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8J7 ^@ Similarity ^@ Belongs to the iron/ascorbate-dependent oxidoreductase family. http://togogenome.org/gene/1313172:YM304_RS22700 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDH6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS04180 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7K2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS3 family.|||Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.|||Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14. http://togogenome.org/gene/1313172:YM304_RS05470 ^@ http://purl.uniprot.org/uniprot/A0A6C7DYU2 ^@ Similarity ^@ Belongs to the peptidase U62 family. http://togogenome.org/gene/1313172:YM304_RS18980 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECA0 ^@ Similarity ^@ Belongs to the SAM hydrolase / SAM-dependent halogenase family. http://togogenome.org/gene/1313172:YM304_RS22990 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAT1 ^@ Similarity ^@ Belongs to the peptidase C40 family. http://togogenome.org/gene/1313172:YM304_RS22755 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDQ5 ^@ Similarity ^@ Belongs to the stealth family. http://togogenome.org/gene/1313172:YM304_RS05830 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA29 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CobD/CbiB family.|||Cell membrane|||Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.|||Membrane http://togogenome.org/gene/1313172:YM304_RS09175 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDU2 ^@ Caution|||Function|||Similarity|||Subunit ^@ ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.|||Belongs to the ClpX chaperone family.|||Component of the ClpX-ClpP complex. Forms a hexameric ring that, in the presence of ATP, binds to fourteen ClpP subunits assembled into a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS01555 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0T4 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS14525 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA03 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS21745 ^@ http://purl.uniprot.org/uniprot/A0A6C7DV70 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS17780 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBU6 ^@ Caution|||Function|||PTM|||Similarity ^@ Acetylated. Deacetylation by the SIR2-homolog deacetylase activates the enzyme.|||Belongs to the ATP-dependent AMP-binding enzyme family.|||Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS09390 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6S7 ^@ Function|||Similarity ^@ Belongs to the bacterial ribosomal protein bL19 family.|||This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. http://togogenome.org/gene/1313172:YM304_RS06510 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZW4 ^@ Function|||Similarity ^@ Acts on leucine, isoleucine and valine.|||Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/1313172:YM304_RS15950 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAZ7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS00805 ^@ http://purl.uniprot.org/uniprot/A0A6C7DU72 ^@ Cofactor|||Similarity ^@ Belongs to the peptidase M20 family.|||Binds 2 Zn(2+) ions per subunit. http://togogenome.org/gene/1313172:YM304_RS21125 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA24 ^@ Function|||Similarity ^@ Belongs to the Stf0 sulfotransferase family.|||Catalyzes the sulfuryl group transfer from 3'-phosphoadenosine-5'-phosphosulfate (PAPS) to trehalose, leading to trehalose-2-sulfate (T2S). http://togogenome.org/gene/1313172:YM304_RS12845 ^@ http://purl.uniprot.org/uniprot/A0A6C7EE21 ^@ Function|||Similarity ^@ Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.|||Catalyzes the biosynthesis of agmatine from arginine. http://togogenome.org/gene/1313172:YM304_RS10045 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2R5 ^@ Similarity ^@ Belongs to the FGGY kinase family. http://togogenome.org/gene/1313172:YM304_RS03680 ^@ http://purl.uniprot.org/uniprot/A0A6C7E795 ^@ Similarity ^@ Belongs to the PNP/UDP phosphorylase family. http://togogenome.org/gene/1313172:YM304_RS14410 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGU6 ^@ Similarity ^@ Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. http://togogenome.org/gene/1313172:YM304_RS09850 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2K4 ^@ Similarity|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Monomer. http://togogenome.org/gene/1313172:YM304_RS02105 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9K4 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the complex I 75 kDa subunit family.|||Binds 1 [2Fe-2S] cluster per subunit.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/1313172:YM304_RS07400 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAX8 ^@ Similarity ^@ Belongs to the UPF0051 (ycf24) family. http://togogenome.org/gene/1313172:YM304_RS06120 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBZ1 ^@ Similarity ^@ Belongs to the trans-sulfuration enzymes family. http://togogenome.org/gene/1313172:YM304_RS02760 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0P5 ^@ Caution|||Cofactor|||Function|||PTM|||Similarity|||Subunit ^@ Belongs to the peroxidase family. Peroxidase/catalase subfamily.|||Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity.|||Binds 1 heme b (iron(II)-protoporphyrin IX) group per dimer.|||Formation of the three residue Trp-Tyr-Met cross-link is important for the catalase, but not the peroxidase activity of the enzyme.|||Homodimer or homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS16485 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAV5 ^@ Function|||Similarity|||Subunit ^@ APS kinase catalyzes the synthesis of activated sulfate.|||Belongs to the APS kinase family.|||Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.|||Catalyzes the synthesis of activated sulfate.|||Heterodimer composed of CysD, the smaller subunit, and CysN.|||In the C-terminal section; belongs to the APS kinase family.|||In the N-terminal section; belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.|||With CysD forms the ATP sulfurylase (ATPS) that catalyzes the adenylation of sulfate producing adenosine 5'-phosphosulfate (APS) and diphosphate, the first enzymatic step in sulfur assimilation pathway. APS synthesis involves the formation of a high-energy phosphoric-sulfuric acid anhydride bond driven by GTP hydrolysis by CysN coupled to ATP hydrolysis by CysD. http://togogenome.org/gene/1313172:YM304_RS20965 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEY5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS05070 ^@ http://purl.uniprot.org/uniprot/A0A6C7E846 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ammonia transporter channel (TC 1.A.11.2) family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS21475 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA98 ^@ Cofactor|||Similarity|||Subunit ^@ Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family.|||Binds 1 FAD per subunit.|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS00030 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZK4 ^@ Similarity ^@ Belongs to the type II topoisomerase GyrB family. http://togogenome.org/gene/1313172:YM304_RS09345 ^@ http://purl.uniprot.org/uniprot/A0A6C7E821 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the FPG family.|||Binds 1 zinc ion per subunit.|||Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. http://togogenome.org/gene/1313172:YM304_RS01640 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZR7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the kynureninase family.|||Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3-hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3-hydroxyanthranilic acid (3-OHAA), respectively.|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS08270 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1A6 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the methylthiotransferase family. RimO subfamily.|||Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein uS12.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS06635 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4Y0 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS17510 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFK5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS22055 ^@ http://purl.uniprot.org/uniprot/A0A6C7E426 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS23445 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEQ2 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CoaE family.|||Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS13780 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9C5 ^@ Activity Regulation|||Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Allosterically activated by GTP. Inhibited by UTP.|||Belongs to the UMP kinase family.|||Catalyzes the reversible phosphorylation of UMP to UDP.|||Cytoplasm|||Homohexamer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS25590 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9U4 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.|||Cytoplasm|||Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. http://togogenome.org/gene/1313172:YM304_RS15230 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFF8 ^@ Similarity ^@ Belongs to the MT-A70-like family. http://togogenome.org/gene/1313172:YM304_RS04725 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB71 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the DtxR/MntR family.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS00810 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5F0 ^@ Similarity ^@ Belongs to the UPF0045 family. http://togogenome.org/gene/1313172:YM304_RS08330 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1B9 ^@ Similarity ^@ Belongs to the FKBP-type PPIase family. http://togogenome.org/gene/1313172:YM304_RS02465 ^@ http://purl.uniprot.org/uniprot/A0A6C7E877 ^@ Similarity ^@ Belongs to the GPN-loop GTPase family. http://togogenome.org/gene/1313172:YM304_RS22655 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8M7 ^@ Similarity ^@ Belongs to the DprA/Smf family. http://togogenome.org/gene/1313172:YM304_RS06435 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4S3 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the aconitase/IPM isomerase family. LeuC type 1 subfamily.|||Binds 1 [4Fe-4S] cluster per subunit.|||Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.|||Heterodimer of LeuC and LeuD. http://togogenome.org/gene/1313172:YM304_RS07520 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5T5 ^@ Similarity ^@ Belongs to the glycosyltransferase 20 family. http://togogenome.org/gene/1313172:YM304_RS22900 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7L1 ^@ Similarity ^@ Belongs to the peptidase C40 family. http://togogenome.org/gene/1313172:YM304_RS13865 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEM4 ^@ Similarity ^@ Belongs to the antibiotic N-acetyltransferase family. http://togogenome.org/gene/1313172:YM304_RS03060 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6P8 ^@ Similarity ^@ Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. http://togogenome.org/gene/1313172:YM304_RS00905 ^@ http://purl.uniprot.org/uniprot/A0A6C7DUA4 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. Thiolase family. http://togogenome.org/gene/1313172:YM304_RS18095 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC78 ^@ Function|||Similarity|||Subunit ^@ Belongs to the succinate/malate CoA ligase alpha subunit family.|||Heterotetramer of two alpha and two beta subunits.|||Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. http://togogenome.org/gene/1313172:YM304_RS16655 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7I8 ^@ Similarity ^@ Belongs to the FPG family. http://togogenome.org/gene/1313172:YM304_RS08060 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5W1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS15 family.|||Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.|||Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA. http://togogenome.org/gene/1313172:YM304_RS13045 ^@ http://purl.uniprot.org/uniprot/A0A6C7E940 ^@ Domain|||Function|||PTM|||Similarity|||Subunit ^@ Belongs to the prokaryotic ubiquitin-like protein family.|||Is modified by deamidation of its C-terminal glutamine to glutamate by the deamidase Dop, a prerequisite to the subsequent pupylation process.|||Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.|||Strongly interacts with the proteasome-associated ATPase ARC through a hydrophobic interface; the interacting region of Pup lies in its C-terminal half. There is one Pup binding site per ARC hexamer ring.|||The N-terminal unstructured half of Pup provides a signal required to initiate unfolding and degradation by the proteasome but is not needed for pupylation, while the C-terminal helical half of Pup interacts with ARC to target proteins to the proteasome. http://togogenome.org/gene/1313172:YM304_RS10230 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7A3 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.|||Binds 1 FMN per subunit.|||Catalyzes the conversion of dihydroorotate to orotate.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS13465 ^@ http://purl.uniprot.org/uniprot/A0A6C7E958 ^@ Similarity ^@ Belongs to the thymidine kinase family. http://togogenome.org/gene/1313172:YM304_RS20350 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDI0 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/1313172:YM304_RS25650 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3S5 ^@ Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MGMT family.|||Cytoplasm|||Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.|||This enzyme catalyzes only one turnover and therefore is not strictly catalytic. According to one definition, an enzyme is a biocatalyst that acts repeatedly and over many reaction cycles. http://togogenome.org/gene/1313172:YM304_RS07150 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5A8 ^@ Similarity ^@ Belongs to the Nth/MutY family. http://togogenome.org/gene/1313172:YM304_RS17315 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGN7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS10250 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB55 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Binds 1 FMN per subunit.|||Catalyzes two sequential steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine. In the second step the latter compound is decarboxylated to form 4'-phosphopantotheine.|||Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine.|||In the C-terminal section; belongs to the PPC synthetase family.|||In the N-terminal section; belongs to the HFCD (homo-oligomeric flavin containing Cys decarboxylase) superfamily.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS01430 ^@ http://purl.uniprot.org/uniprot/A0A6C7E972 ^@ Similarity ^@ Belongs to the long-chain O-acyltransferase family. http://togogenome.org/gene/1313172:YM304_RS15840 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAH8 ^@ Similarity ^@ Belongs to the AHA1 family. http://togogenome.org/gene/1313172:YM304_RS07350 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAW8 ^@ Similarity|||Subunit ^@ Belongs to the NAD(P)-dependent epimerase/dehydratase family.|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS01065 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7E7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS12175 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC80 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TrpB family.|||Tetramer of two alpha and two beta chains.|||The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine. http://togogenome.org/gene/1313172:YM304_RS15590 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAD4 ^@ Similarity ^@ Belongs to the HAD-like hydrolase superfamily. SerB family. http://togogenome.org/gene/1313172:YM304_RS15870 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9T1 ^@ Similarity ^@ Belongs to the ROK (NagC/XylR) family. http://togogenome.org/gene/1313172:YM304_RS12455 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8L0 ^@ Similarity ^@ Belongs to the TlyA family. http://togogenome.org/gene/1313172:YM304_RS18575 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC20 ^@ Caution|||Domain|||Function|||Similarity ^@ Belongs to the RecA family. RadA subfamily.|||DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Plays a role in repairing double-strand DNA breaks, probably involving stabilizing or processing branched DNA or blocked replication forks.|||The middle region has homology to RecA with ATPase motifs including the RadA KNRFG motif, while the C-terminus is homologous to Lon protease. http://togogenome.org/gene/1313172:YM304_RS07525 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0M7 ^@ Similarity ^@ Belongs to the trans-sulfuration enzymes family. http://togogenome.org/gene/1313172:YM304_RS10645 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7I0 ^@ Similarity ^@ Belongs to the HAD-like hydrolase superfamily. SerB family. http://togogenome.org/gene/1313172:YM304_RS04820 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7Z3 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CcmB/CycW/HelB family.|||Cell inner membrane|||Membrane|||Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes. http://togogenome.org/gene/1313172:YM304_RS18050 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8C9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS06495 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4U6 ^@ Function|||Similarity ^@ Belongs to the GreA/GreB family.|||Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. http://togogenome.org/gene/1313172:YM304_RS16060 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEP1 ^@ Similarity ^@ Belongs to the universal stress protein A family. http://togogenome.org/gene/1313172:YM304_RS05655 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4E6 ^@ Similarity ^@ Belongs to the Rv1128c/1148c/1588c/1702c/1945/3466 family. http://togogenome.org/gene/1313172:YM304_RS11335 ^@ http://purl.uniprot.org/uniprot/A0A6C7E755 ^@ Function|||Subcellular Location Annotation|||Subunit ^@ Cytoplasm|||Heterodimer of HisH and HisF.|||IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. http://togogenome.org/gene/1313172:YM304_RS05410 ^@ http://purl.uniprot.org/uniprot/A0A6C7E474 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS14315 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8X7 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.|||Belongs to the AAA ATPase family.|||Binds 1 zinc ion per subunit.|||Cell membrane|||Homohexamer.|||In the C-terminal section; belongs to the peptidase M41 family.|||In the central section; belongs to the AAA ATPase family. http://togogenome.org/gene/1313172:YM304_RS05815 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8J9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.|||Membrane http://togogenome.org/gene/1313172:YM304_RS14905 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAC0 ^@ Similarity ^@ Belongs to the NAD(P)-dependent epimerase/dehydratase family. SDR39U1 subfamily. http://togogenome.org/gene/1313172:YM304_RS02470 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6A7 ^@ Caution|||Similarity|||Subcellular Location Annotation ^@ Belongs to the uridine kinase family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS21380 ^@ http://purl.uniprot.org/uniprot/A0A6C7EHY6 ^@ Function|||Similarity ^@ Belongs to the bacterial ribosomal protein bL9 family.|||Binds to the 23S rRNA. http://togogenome.org/gene/1313172:YM304_RS02300 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0B3 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/1313172:YM304_RS10565 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEM1 ^@ Caution|||Cofactor|||Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the DnaJ family.|||Binds 2 Zn(2+) ions per monomer.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.|||The J domain is necessary and sufficient to stimulate DnaK ATPase activity. Zinc center 1 plays an important role in the autonomous, DnaK-independent chaperone activity of DnaJ. Zinc center 2 is essential for interaction with DnaK and for DnaJ activity. http://togogenome.org/gene/1313172:YM304_RS21495 ^@ http://purl.uniprot.org/uniprot/A0A6C7EJA0 ^@ Similarity ^@ Belongs to the ParB family. http://togogenome.org/gene/1313172:YM304_RS00410 ^@ http://purl.uniprot.org/uniprot/A0A6C7E706 ^@ Similarity ^@ To bacterial alkanal monooxygenase alpha and beta chains. http://togogenome.org/gene/1313172:YM304_RS14415 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8Z7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.|||Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS05190 ^@ http://purl.uniprot.org/uniprot/A0A6C7E818 ^@ Function|||Similarity ^@ Belongs to the threonine synthase family.|||Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine. http://togogenome.org/gene/1313172:YM304_RS12315 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8T6 ^@ Similarity ^@ Belongs to the type-B carboxylesterase/lipase family. http://togogenome.org/gene/1313172:YM304_RS05135 ^@ http://purl.uniprot.org/uniprot/A0A6C7E807 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS05885 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8G6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS19320 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDW9 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ 3'-to-5' exoribonuclease specific for small oligoribonucleotides.|||Belongs to the oligoribonuclease family.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS13360 ^@ http://purl.uniprot.org/uniprot/A0A6C7E939 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS04945 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3L9 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/1313172:YM304_RS06650 ^@ http://purl.uniprot.org/uniprot/A0A6C7E576 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS06065 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8P8 ^@ Similarity ^@ Belongs to the SurE nucleotidase family. http://togogenome.org/gene/1313172:YM304_RS05560 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZ30 ^@ Cofactor|||Similarity ^@ Belongs to the peptidase M1 family.|||Binds 1 zinc ion per subunit. http://togogenome.org/gene/1313172:YM304_RS19100 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBK8 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the L/F-transferase family.|||Cytoplasm|||Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. http://togogenome.org/gene/1313172:YM304_RS16170 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9Y6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS03835 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1Q4 ^@ Cofactor|||Function|||PTM|||Similarity|||Subcellular Location Annotation ^@ Acts as a transcriptional regulator. Probably redox-responsive. The apo- but not holo-form probably binds DNA.|||Belongs to the WhiB family.|||Binds 1 [4Fe-4S] cluster per subunit. Following nitrosylation of the [4Fe-4S] cluster binds 1 [4Fe-8(NO)] cluster per subunit.|||Cytoplasm|||The Fe-S cluster can be nitrosylated by nitric oxide (NO).|||Upon Fe-S cluster removal intramolecular disulfide bonds are formed. http://togogenome.org/gene/1313172:YM304_RS19200 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBN2 ^@ Similarity ^@ Belongs to the glutamine synthetase family. http://togogenome.org/gene/1313172:YM304_RS05285 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9S5 ^@ Similarity ^@ Belongs to the LacAB/RpiB family. http://togogenome.org/gene/1313172:YM304_RS22510 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9G6 ^@ Similarity ^@ Belongs to the CbxX/CfxQ family. http://togogenome.org/gene/1313172:YM304_RS17840 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED00 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I subunit 4L family.|||Cell membrane|||Membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/1313172:YM304_RS14510 ^@ http://purl.uniprot.org/uniprot/A0A6C7E927 ^@ Similarity ^@ Belongs to the nitroreductase family. http://togogenome.org/gene/1313172:YM304_RS02730 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1R7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS15755 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6X5 ^@ Similarity ^@ Belongs to the sulfatase family. http://togogenome.org/gene/1313172:YM304_RS02535 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1S1 ^@ Activity Regulation|||Caution|||Domain|||Function|||Similarity ^@ Belongs to the GlnD family.|||Has four distinct domains: an N-terminal nucleotidyltransferase (NT) domain responsible for UTase activity, a central HD domain that encodes UR activity, and two C-terminal ACT domains that seem to have a role in glutamine sensing.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.|||Uridylyltransferase (UTase) activity is inhibited by glutamine, while glutamine activates uridylyl-removing (UR) activity. http://togogenome.org/gene/1313172:YM304_RS15875 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFT4 ^@ Similarity ^@ Belongs to the glycosyl hydrolase 31 family. http://togogenome.org/gene/1313172:YM304_RS13470 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAG5 ^@ Similarity ^@ Belongs to the ATP-dependent DNA ligase family. http://togogenome.org/gene/1313172:YM304_RS16550 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBB7 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the methyltransferase superfamily. RsmI family.|||Belongs to the precorrin methyltransferase family.|||Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS17740 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECX5 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the chaperonin (HSP60) family.|||Cell surface|||Cytoplasm|||Forms a cylinder of 14 subunits composed of two heptameric rings stacked back-to-back. Interacts with the co-chaperonin GroES.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Together with its co-chaperonin GroES, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding.|||capsule|||cell wall http://togogenome.org/gene/1313172:YM304_RS00770 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZ03 ^@ Similarity ^@ Belongs to the BMP lipoprotein family. http://togogenome.org/gene/1313172:YM304_RS04500 ^@ http://purl.uniprot.org/uniprot/A0A6C7E394 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the KAE1 / TsaD family.|||Binds 1 Fe(2+) ion per subunit.|||Cytoplasm|||Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction. http://togogenome.org/gene/1313172:YM304_RS13150 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAA2 ^@ Similarity|||Subunit ^@ Belongs to the transketolase family.|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS18975 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECJ6 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the transcriptional regulatory Rex family.|||Cytoplasm|||Homodimer.|||Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. http://togogenome.org/gene/1313172:YM304_RS10745 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7K1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS00495 ^@ http://purl.uniprot.org/uniprot/A0A6C7DTX4 ^@ Similarity ^@ Belongs to the F420H(2)-dependent quinone reductase family. http://togogenome.org/gene/1313172:YM304_RS18700 ^@ http://purl.uniprot.org/uniprot/A0A6C7EJ93 ^@ Similarity ^@ Belongs to the bacterial solute-binding protein ModA family. http://togogenome.org/gene/1313172:YM304_RS05165 ^@ http://purl.uniprot.org/uniprot/A0A6C7DYJ7 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Cytoplasm|||Monomer. http://togogenome.org/gene/1313172:YM304_RS13730 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9B9 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the NucS endonuclease family.|||Cleaves both 3' and 5' ssDNA extremities of branched DNA structures.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS19340 ^@ http://purl.uniprot.org/uniprot/A0A6C7EJN8 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the pyridoxamine 5'-phosphate oxidase family.|||Binds 1 FMN per subunit.|||Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS14200 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5W6 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS07095 ^@ http://purl.uniprot.org/uniprot/A0A6C7E942 ^@ Similarity ^@ Belongs to the LOG family. http://togogenome.org/gene/1313172:YM304_RS17125 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBH0 ^@ Similarity ^@ Belongs to the long-chain O-acyltransferase family. http://togogenome.org/gene/1313172:YM304_RS15175 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9E5 ^@ Caution|||Function|||Similarity ^@ Belongs to the NAD(P)-dependent epimerase/dehydratase family. GDP-mannose 4,6-dehydratase subfamily.|||Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS05600 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5L4 ^@ Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. http://togogenome.org/gene/1313172:YM304_RS08150 ^@ http://purl.uniprot.org/uniprot/A0A6C7E620 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the HupC/HyaC/HydC family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS21365 ^@ http://purl.uniprot.org/uniprot/A0A6C7EF81 ^@ Function|||Similarity ^@ Antitoxin component of a type II toxin-antitoxin (TA) system.|||Belongs to the phD/YefM antitoxin family. http://togogenome.org/gene/1313172:YM304_RS09365 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDY3 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GTP-binding SRP family. SRP54 subfamily.|||Composed of three domains: the N-terminal N domain, which is responsible for interactions with the ribosome, the central G domain, which binds GTP, and the C-terminal M domain, which binds the RNA and the signal sequence of the RNC.|||Cytoplasm|||Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY.|||Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. http://togogenome.org/gene/1313172:YM304_RS09055 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA76 ^@ Similarity ^@ Belongs to the UPF0051 (ycf24) family. http://togogenome.org/gene/1313172:YM304_RS19030 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDQ8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the CPA3 antiporters (TC 2.A.63) subunit E family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS17225 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBJ7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS20650 ^@ http://purl.uniprot.org/uniprot/A0A6C7EH05 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the aspartate-semialdehyde dehydrogenase family.|||Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS13220 ^@ http://purl.uniprot.org/uniprot/A0A6C7EG39 ^@ Similarity ^@ Belongs to the Nudix hydrolase family. http://togogenome.org/gene/1313172:YM304_RS13060 ^@ http://purl.uniprot.org/uniprot/A0A6C7E989 ^@ Similarity|||Subunit ^@ Belongs to the AAA ATPase family.|||Homohexamer. Assembles into a hexameric ring structure. http://togogenome.org/gene/1313172:YM304_RS06115 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8Q6 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. Thiolase family. http://togogenome.org/gene/1313172:YM304_RS05350 ^@ http://purl.uniprot.org/uniprot/A0A6C7E400 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ATPase epsilon chain family.|||Cell membrane|||F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. http://togogenome.org/gene/1313172:YM304_RS03955 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2X0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.|||Cytoplasm|||Monomer.|||This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. http://togogenome.org/gene/1313172:YM304_RS10800 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8X6 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ABC transporter superfamily. UvrA family.|||Cytoplasm|||Forms a heterotetramer with UvrB during the search for lesions.|||The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. http://togogenome.org/gene/1313172:YM304_RS00530 ^@ http://purl.uniprot.org/uniprot/A0A6C7E002 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. Thiolase family. http://togogenome.org/gene/1313172:YM304_RS18570 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECB3 ^@ Similarity ^@ Belongs to the ABC transporter superfamily. http://togogenome.org/gene/1313172:YM304_RS10325 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7G9 ^@ Similarity ^@ Belongs to the bacterial ribosomal protein bL35 family. http://togogenome.org/gene/1313172:YM304_RS13505 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECV8 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the NrdR family.|||Binds 1 zinc ion.|||Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR-boxes. http://togogenome.org/gene/1313172:YM304_RS11755 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8B4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS08725 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6L9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the UPF0702 family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS18875 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFY9 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/1313172:YM304_RS01925 ^@ http://purl.uniprot.org/uniprot/A0A6C7E141 ^@ Function|||Similarity ^@ Belongs to the sigma-70 factor family.|||Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. http://togogenome.org/gene/1313172:YM304_RS06785 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3Z4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS18125 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFI6 ^@ Similarity ^@ Belongs to the helicase family. UvrD subfamily. http://togogenome.org/gene/1313172:YM304_RS16065 ^@ http://purl.uniprot.org/uniprot/A0A6C7EHR3 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS12465 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8W5 ^@ Function|||Similarity ^@ Belongs to the RecN family.|||May be involved in recombinational repair of damaged DNA. http://togogenome.org/gene/1313172:YM304_RS00715 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8U2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS15660 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEF3 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/1313172:YM304_RS00100 ^@ http://purl.uniprot.org/uniprot/A0A6C7DTI3 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS01775 ^@ http://purl.uniprot.org/uniprot/A0A6C7DV52 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.|||Binds 1 zinc ion per subunit.|||Cytoplasm|||Monomer. Associates with 30S ribosomal subunit, binds 16S rRNA.|||One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit. http://togogenome.org/gene/1313172:YM304_RS02945 ^@ http://purl.uniprot.org/uniprot/A0A6C7DWC0 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS05495 ^@ http://purl.uniprot.org/uniprot/A0A6C7E439 ^@ Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation ^@ Bacitracin is thought to be involved in the inhibition of peptidoglycan synthesis by sequestering undecaprenyl diphosphate, thereby reducing the pool of lipid carrier available.|||Belongs to the UppP family.|||Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS10580 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB50 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the anaerobic coproporphyrinogen-III oxidase family. HemW subfamily.|||Cytoplasm|||Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. http://togogenome.org/gene/1313172:YM304_RS03750 ^@ http://purl.uniprot.org/uniprot/A0A6C7E753 ^@ Activity Regulation|||Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-stimulated subfamily.|||Cell membrane|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane|||Requires K(+) for maximal activity.|||Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na(+) movement across the membrane. http://togogenome.org/gene/1313172:YM304_RS14875 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDL3 ^@ Similarity ^@ Belongs to the 2-oxoacid dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS16975 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEV3 ^@ Similarity|||Subunit ^@ Belongs to the acetyltransferase Eis family.|||Homohexamer; trimer of dimers. http://togogenome.org/gene/1313172:YM304_RS21480 ^@ http://purl.uniprot.org/uniprot/A0A6C7EI08 ^@ Similarity ^@ Belongs to the ArsC family. http://togogenome.org/gene/1313172:YM304_RS03665 ^@ http://purl.uniprot.org/uniprot/A0A6C7E470 ^@ Function|||Similarity ^@ Belongs to the LDH/MDH superfamily. MDH type 2 family.|||Catalyzes the reversible oxidation of malate to oxaloacetate. http://togogenome.org/gene/1313172:YM304_RS07465 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5G8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the WhiB family.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS00175 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZQ1 ^@ Similarity ^@ Belongs to the peptidase S8 family. http://togogenome.org/gene/1313172:YM304_RS09935 ^@ http://purl.uniprot.org/uniprot/A0A6C7E740 ^@ Caution|||Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RuvA family.|||Cytoplasm|||Has three domains with a flexible linker between the domains II and III and assumes an 'L' shape. Domain III is highly mobile and contacts RuvB.|||Homotetramer. Forms an RuvA(8)-RuvB(12)-Holliday junction (HJ) complex. HJ DNA is sandwiched between 2 RuvA tetramers; dsDNA enters through RuvA and exits via RuvB. An RuvB hexamer assembles on each DNA strand where it exits the tetramer. Each RuvB hexamer is contacted by two RuvA subunits (via domain III) on 2 adjacent RuvB subunits; this complex drives branch migration. In the full resolvosome a probable DNA-RuvA(4)-RuvB(12)-RuvC(2) complex forms which resolves the HJ.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||The RuvA-RuvB-RuvC complex processes Holliday junction (HJ) DNA during genetic recombination and DNA repair, while the RuvA-RuvB complex plays an important role in the rescue of blocked DNA replication forks via replication fork reversal (RFR). RuvA specifically binds to HJ cruciform DNA, conferring on it an open structure. The RuvB hexamer acts as an ATP-dependent pump, pulling dsDNA into and through the RuvAB complex. HJ branch migration allows RuvC to scan DNA until it finds its consensus sequence, where it cleaves and resolves the cruciform DNA. http://togogenome.org/gene/1313172:YM304_RS12915 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA51 ^@ Similarity ^@ Belongs to the glycosyl hydrolase 2 family. http://togogenome.org/gene/1313172:YM304_RS09950 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2N3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the QueA family.|||Cytoplasm|||Monomer.|||Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). http://togogenome.org/gene/1313172:YM304_RS07480 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9H2 ^@ Similarity ^@ Belongs to the bacterial histone-like protein family. http://togogenome.org/gene/1313172:YM304_RS15995 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBX5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS04845 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3J0 ^@ Function|||Similarity ^@ Belongs to the CcmH/CycL/Ccl2/NrfF family.|||Possible subunit of a heme lyase. http://togogenome.org/gene/1313172:YM304_RS13935 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9F6 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the SmpB family.|||Cytoplasm|||Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA; the nascent peptide is terminated with the 'tag peptide' encoded by the tmRNA and targeted for degradation. The ribosome is freed to recommence translation, which seems to be the essential function of trans-translation. http://togogenome.org/gene/1313172:YM304_RS22200 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9F9 ^@ Similarity ^@ Belongs to the UPF0098 family. http://togogenome.org/gene/1313172:YM304_RS08400 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBH4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS14290 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAY4 ^@ Similarity ^@ Belongs to the UPF0434 family. http://togogenome.org/gene/1313172:YM304_RS03340 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6W3 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the urease beta subunit family.|||Cytoplasm|||Heterotrimer of UreA (gamma), UreB (beta) and UreC (alpha) subunits. Three heterotrimers associate to form the active enzyme. http://togogenome.org/gene/1313172:YM304_RS12955 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8W2 ^@ Activity Regulation|||Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Activated by a monovalent cation that binds near, but not in, the active site. The most likely occupant of the site in vivo is potassium. Ion binding induces a conformational change that may alter substrate affinity.|||Belongs to the carbohydrate kinase PfkB family. Ribokinase subfamily.|||Belongs to the carbohydrate kinase pfkB family.|||Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Requires a divalent cation, most likely magnesium in vivo, as an electrophilic catalyst to aid phosphoryl group transfer. It is the chelate of the metal and the nucleotide that is the actual substrate. http://togogenome.org/gene/1313172:YM304_RS09955 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB01 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the queuine tRNA-ribosyltransferase family.|||Binds 1 zinc ion per subunit.|||Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).|||Homodimer. Within each dimer, one monomer is responsible for RNA recognition and catalysis, while the other monomer binds to the replacement base PreQ1. http://togogenome.org/gene/1313172:YM304_RS01765 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2I1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the type IA topoisomerase family.|||Monomer.|||Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone. http://togogenome.org/gene/1313172:YM304_RS07510 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5H9 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the RNase HII family.|||Cytoplasm|||Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.|||Manganese or magnesium. Binds 1 divalent metal ion per monomer in the absence of substrate. May bind a second metal ion after substrate binding. http://togogenome.org/gene/1313172:YM304_RS06985 ^@ http://purl.uniprot.org/uniprot/A0A6C7E456 ^@ Function|||Similarity|||Subunit ^@ Belongs to the class-I fumarase family.|||Catalyzes the reversible hydration of fumarate to (S)-malate.|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS05290 ^@ http://purl.uniprot.org/uniprot/A0A6C7E842 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SHMT family.|||Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS07800 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9H8 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS05580 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9X7 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.|||Binds 1 zinc ion per subunit.|||Catalyzes the hydrolytic deamination of adenosine and 2-deoxyadenosine.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS17770 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAU2 ^@ Similarity ^@ Belongs to the UPF0234 family. http://togogenome.org/gene/1313172:YM304_RS22230 ^@ http://purl.uniprot.org/uniprot/A0A6C7E600 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS05340 ^@ http://purl.uniprot.org/uniprot/A0A6C7E852 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ATPase gamma chain family.|||Cell membrane|||F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. http://togogenome.org/gene/1313172:YM304_RS08960 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6K5 ^@ Similarity ^@ Belongs to the GHMP kinase family. GalK subfamily. http://togogenome.org/gene/1313172:YM304_RS09170 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAJ3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peptidase S14 family.|||Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.|||Cytoplasm|||Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes. http://togogenome.org/gene/1313172:YM304_RS13215 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECU2 ^@ Similarity ^@ Belongs to the AAA ATPase family. RarA/MGS1/WRNIP1 subfamily. http://togogenome.org/gene/1313172:YM304_RS16370 ^@ http://purl.uniprot.org/uniprot/A0A6C7EG59 ^@ Caution ^@ Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS00795 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1T1 ^@ Similarity ^@ Belongs to the xanthine dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS10705 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8V4 ^@ Function|||Similarity ^@ Belongs to the DNA polymerase type-A family.|||In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. http://togogenome.org/gene/1313172:YM304_RS16480 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB34 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS10170 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAX0 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the shikimate kinase family.|||Binds 1 Mg(2+) ion per subunit.|||Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.|||Cytoplasm|||Monomer. http://togogenome.org/gene/1313172:YM304_RS25700 ^@ http://purl.uniprot.org/uniprot/A0A6C7EKW2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the bacterial ribosomal protein bS18 family.|||Binds as a heterodimer with protein bS6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit.|||Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein bS6. http://togogenome.org/gene/1313172:YM304_RS14020 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEQ8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS11165 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3M5 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MurCDEF family. MurF subfamily.|||Cytoplasm|||Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein. http://togogenome.org/gene/1313172:YM304_RS09755 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAW5 ^@ Similarity ^@ Belongs to the purine nucleoside phosphorylase YfiH/LACC1 family. http://togogenome.org/gene/1313172:YM304_RS06155 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5Z4 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the transketolase family. DXPS subfamily.|||Binds 1 Mg(2+) ion per subunit.|||Binds 1 thiamine pyrophosphate per subunit.|||Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP).|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS22210 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0Z6 ^@ Similarity ^@ Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family. http://togogenome.org/gene/1313172:YM304_RS13635 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAJ5 ^@ Caution|||Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ A translation factor that gates the progression of the 70S ribosomal initiation complex (IC, containing tRNA(fMet) in the P-site) into the translation elongation cycle by using a mechanism sensitive to the ATP/ADP ratio. Binds to the 70S ribosome E-site where it modulates the state of the translating ribosome during subunit translocation. ATP hydrolysis probably frees it from the ribosome, which can enter the elongation phase.|||Belongs to the ABC transporter superfamily. ABCF family. Translational throttle EttA subfamily.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. Probably contacts ribosomal proteins L1, L5, L33 and S7, the 16S and 23S rRNA and the P-site containing tRNA(fMet).|||The P-site tRNA interaction motif (PtIM domain) probably interacts with the P-site tRNA(fMet) as well as the 23S rRNA.|||The arm domain is inserted in the first ABC transporter domain. Probably contacts ribosomal protein L1. http://togogenome.org/gene/1313172:YM304_RS07035 ^@ http://purl.uniprot.org/uniprot/A0A6C7E469 ^@ PTM|||Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. Hydantoinase/dihydropyrimidinase family.|||Carbamylation allows a single lysine to coordinate two divalent metal cations. http://togogenome.org/gene/1313172:YM304_RS09835 ^@ http://purl.uniprot.org/uniprot/A0A6C7E723 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the UPF0410 family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS04475 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7S2 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the NnrD/CARKD family.|||Belongs to the NnrE/AIBP family.|||Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.|||Binds 1 potassium ion per subunit.|||Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.|||Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.|||Homotetramer.|||In the C-terminal section; belongs to the NnrD/CARKD family.|||In the N-terminal section; belongs to the NnrE/AIBP family.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS04385 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAZ2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS13 family.|||Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.|||Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome. http://togogenome.org/gene/1313172:YM304_RS20155 ^@ http://purl.uniprot.org/uniprot/A0A6C7EH81 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS12835 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFX5 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS08445 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDB8 ^@ Function|||Similarity ^@ Belongs to the DHNA family.|||Catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin.|||In the N-terminal section; belongs to the DHNA family. http://togogenome.org/gene/1313172:YM304_RS19635 ^@ http://purl.uniprot.org/uniprot/A0A6C7EE43 ^@ Cofactor|||Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the DnaJ family.|||Binds 2 Zn(2+) ions per monomer.|||Cytoplasm|||Homodimer.|||Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.|||The J domain is necessary and sufficient to stimulate DnaK ATPase activity. Zinc center 1 plays an important role in the autonomous, DnaK-independent chaperone activity of DnaJ. Zinc center 2 is essential for interaction with DnaK and for DnaJ activity. http://togogenome.org/gene/1313172:YM304_RS01830 ^@ http://purl.uniprot.org/uniprot/A0A6C7E639 ^@ Similarity ^@ Belongs to the GSP E family. http://togogenome.org/gene/1313172:YM304_RS09215 ^@ http://purl.uniprot.org/uniprot/A0A6C7E210 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS00470 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZY6 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS08280 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED91 ^@ Similarity ^@ Belongs to the CinA family. http://togogenome.org/gene/1313172:YM304_RS19720 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGJ2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the dCTP deaminase family.|||Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.|||Homotrimer. http://togogenome.org/gene/1313172:YM304_RS13825 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9K0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peptidase S14 family.|||Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.|||Cytoplasm|||Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes. http://togogenome.org/gene/1313172:YM304_RS03335 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8Q2 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the urease gamma subunit family.|||Cytoplasm|||Heterotrimer of UreA (gamma), UreB (beta) and UreC (alpha) subunits. Three heterotrimers associate to form the active enzyme. http://togogenome.org/gene/1313172:YM304_RS10850 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8Y7 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the phosphoglycerate kinase family.|||Cytoplasm|||Monomer. http://togogenome.org/gene/1313172:YM304_RS15415 ^@ http://purl.uniprot.org/uniprot/A0A6C7EHD4 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS10255 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEF8 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the AdoMet synthase family.|||Binds 1 potassium ion per subunit.|||Binds 2 divalent ions per subunit.|||Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.|||Cytoplasm|||Homotetramer; dimer of dimers. http://togogenome.org/gene/1313172:YM304_RS11395 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBL3 ^@ Similarity ^@ Belongs to the PEP-utilizing enzyme family. http://togogenome.org/gene/1313172:YM304_RS04480 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB14 ^@ Function|||Similarity ^@ Belongs to the alanine racemase family.|||Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids. http://togogenome.org/gene/1313172:YM304_RS08200 ^@ http://purl.uniprot.org/uniprot/A0A6C7E629 ^@ Cofactor|||Similarity ^@ Belongs to the malic enzymes family.|||Divalent metal cations. Prefers magnesium or manganese. http://togogenome.org/gene/1313172:YM304_RS07120 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0B1 ^@ Similarity ^@ Belongs to the HMG-CoA lyase family. http://togogenome.org/gene/1313172:YM304_RS09680 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAK8 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS09970 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECF1 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SecD/SecF family. SecF subfamily.|||Cell membrane|||Forms a complex with SecD. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.|||Membrane|||Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. http://togogenome.org/gene/1313172:YM304_RS10675 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6Q3 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the thiolase-like superfamily. FabH family.|||Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids.|||Cytoplasm|||Homodimer.|||The last Arg residue of the ACP-binding site is essential for the weak association between ACP/AcpP and FabH. http://togogenome.org/gene/1313172:YM304_RS18585 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECH9 ^@ Similarity ^@ Belongs to the iron/ascorbate-dependent oxidoreductase family. http://togogenome.org/gene/1313172:YM304_RS02815 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8E7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS13340 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8D4 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS02605 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9V2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TrpB family.|||Tetramer of two alpha and two beta chains.|||The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine. http://togogenome.org/gene/1313172:YM304_RS11685 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7D2 ^@ Cofactor|||Similarity ^@ Belongs to the DNA repair enzymes AP/ExoA family.|||Probably binds two magnesium or manganese ions per subunit. http://togogenome.org/gene/1313172:YM304_RS21835 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA01 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS05060 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3X8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ammonia transporter channel (TC 1.A.11.2) family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS11235 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED56 ^@ Function|||Similarity ^@ Belongs to the AlaDH/PNT family.|||Catalyzes the reversible reductive amination of pyruvate to L-alanine. http://togogenome.org/gene/1313172:YM304_RS17850 ^@ http://purl.uniprot.org/uniprot/A0A6C7E887 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I 23 kDa subunit family.|||Binds 2 [4Fe-4S] clusters per subunit.|||Cell membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/1313172:YM304_RS18730 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDI2 ^@ Similarity ^@ Belongs to the XseB family. http://togogenome.org/gene/1313172:YM304_RS25165 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDT2 ^@ Function|||Similarity ^@ Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.|||Necessary for normal cell division and for the maintenance of normal septation. http://togogenome.org/gene/1313172:YM304_RS19080 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECS4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS09340 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6R7 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ribonuclease III family.|||Cytoplasm|||Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS06535 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4V2 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS00425 ^@ http://purl.uniprot.org/uniprot/A0A6C7E037 ^@ Similarity ^@ Belongs to the carbon-nitrogen hydrolase superfamily. Nitrilase family. http://togogenome.org/gene/1313172:YM304_RS17560 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFL9 ^@ Similarity ^@ Belongs to the xanthine dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS13540 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGC7 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the IPP transferase family.|||Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. http://togogenome.org/gene/1313172:YM304_RS07860 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5R1 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/1313172:YM304_RS10930 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6V8 ^@ Cofactor|||Similarity ^@ Belongs to the Fur family.|||Binds 1 Mn(2+) or Fe(2+) ion per subunit.|||Binds 1 zinc ion per subunit. http://togogenome.org/gene/1313172:YM304_RS16830 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB16 ^@ Similarity ^@ Belongs to the LysR transcriptional regulatory family. http://togogenome.org/gene/1313172:YM304_RS08345 ^@ http://purl.uniprot.org/uniprot/A0A6C7E544 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS08625 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7J4 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS09775 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAN4 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.|||Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).|||Cytoplasm|||IleRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated valine is translocated from the active site to the editing site, which sterically excludes the correctly activated isoleucine. The single editing site contains two valyl binding pockets, one specific for each substrate (Val-AMP or Val-tRNA(Ile)).|||Monomer. http://togogenome.org/gene/1313172:YM304_RS16815 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGE0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family.|||Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS04245 ^@ http://purl.uniprot.org/uniprot/A0A6C7E979 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL15 family.|||Binds to the 23S rRNA.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/1313172:YM304_RS09260 ^@ http://purl.uniprot.org/uniprot/A0A6C7E226 ^@ Similarity ^@ Belongs to the bacterial ribosomal protein bL28 family. http://togogenome.org/gene/1313172:YM304_RS09375 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC24 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ A probable RNA-binding protein.|||Belongs to the KhpA RNA-binding protein family.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS05735 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8D6 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Belongs to the ketol-acid reductoisomerase family.|||Binds 2 magnesium ions per subunit.|||Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS10640 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7N2 ^@ Similarity ^@ Belongs to the LysR transcriptional regulatory family. http://togogenome.org/gene/1313172:YM304_RS16115 ^@ http://purl.uniprot.org/uniprot/A0A6C7EHS0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS15475 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFK2 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS13805 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGH4 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the 'phage' integrase family. XerC subfamily.|||Cytoplasm|||Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.|||Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. http://togogenome.org/gene/1313172:YM304_RS04555 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3C2 ^@ Similarity ^@ Belongs to the C/M/P thioester hydrolase family. http://togogenome.org/gene/1313172:YM304_RS10275 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7F7 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the polypeptide deformylase family.|||Binds 1 Fe(2+) ion.|||Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. http://togogenome.org/gene/1313172:YM304_RS10410 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6J6 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the ArgR family.|||Cytoplasm|||Regulates arginine biosynthesis genes. http://togogenome.org/gene/1313172:YM304_RS14680 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9V9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS10665 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBE1 ^@ Function|||PTM|||Similarity|||Subcellular Location Annotation ^@ 4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by AcpS. This modification is essential for activity because fatty acids are bound in thioester linkage to the sulfhydryl of the prosthetic group.|||4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by acpS.|||Belongs to the acyl carrier protein (ACP) family.|||Carrier of the growing fatty acid chain in fatty acid biosynthesis.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS19425 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDY9 ^@ Similarity ^@ Belongs to the sterol desaturase family. http://togogenome.org/gene/1313172:YM304_RS13785 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAM4 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.|||Belongs to the EF-Ts family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS19090 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGL9 ^@ Subcellular Location Annotation ^@ Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS11230 ^@ http://purl.uniprot.org/uniprot/A0A6C7E738 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/1313172:YM304_RS00355 ^@ http://purl.uniprot.org/uniprot/A0A6C7DYL1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS07295 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAW1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS11505 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDA9 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the PNP/UDP phosphorylase family.|||Catalyzes the reversible phosphorylytic cleavage of uridine to uracil and ribose-1-phosphate.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS01845 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7V8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.|||Cytoplasm|||Homodimer.|||Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. http://togogenome.org/gene/1313172:YM304_RS22305 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAI0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS07235 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECM0 ^@ Similarity ^@ Belongs to the DegT/DnrJ/EryC1 family. http://togogenome.org/gene/1313172:YM304_RS14260 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGR3 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the TMEM86 family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS19505 ^@ http://purl.uniprot.org/uniprot/A0A6C7EJS8 ^@ Similarity ^@ Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. http://togogenome.org/gene/1313172:YM304_RS06250 ^@ http://purl.uniprot.org/uniprot/A0A6C7E623 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/1313172:YM304_RS05225 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBG6 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.|||Binds 1 zinc ion per subunit.|||Binds the 23S rRNA.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/1313172:YM304_RS22335 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAF3 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.|||Belongs to the RimM family.|||Binds ribosomal protein uS19.|||Cytoplasm|||The PRC barrel domain binds ribosomal protein uS19. http://togogenome.org/gene/1313172:YM304_RS12385 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7S7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS12790 ^@ http://purl.uniprot.org/uniprot/A0A6C7EE05 ^@ Caution|||Function|||Similarity|||Subunit ^@ Associates with the 50S ribosomal subunit.|||Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.|||GTPase that plays an essential role in the late steps of ribosome biogenesis.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS08130 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED51 ^@ Function|||Miscellaneous|||Similarity|||Subunit ^@ Belongs to the peroxiredoxin family. Tpx subfamily.|||Homodimer.|||The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this atypical 2-Cys peroxiredoxin, C(R) is present in the same subunit to form an intramolecular disulfide. The disulfide is subsequently reduced by thioredoxin.|||Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. http://togogenome.org/gene/1313172:YM304_RS19225 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECV5 ^@ Similarity ^@ Belongs to the RutC family. http://togogenome.org/gene/1313172:YM304_RS13680 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9B1 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS05780 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA21 ^@ Similarity ^@ Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/1313172:YM304_RS05980 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA59 ^@ Similarity ^@ Belongs to the AHA1 family. http://togogenome.org/gene/1313172:YM304_RS19845 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECT7 ^@ Similarity ^@ Belongs to the PrpD family. http://togogenome.org/gene/1313172:YM304_RS11180 ^@ http://purl.uniprot.org/uniprot/A0A6C7E722 ^@ Similarity ^@ Belongs to the peptidase S33 family. http://togogenome.org/gene/1313172:YM304_RS02365 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1H1 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the IspF family.|||Binds 1 divalent metal cation per subunit.|||Homotrimer.|||Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS17260 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAJ9 ^@ Similarity ^@ Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS18100 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8E0 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the succinate/malate CoA ligase beta subunit family.|||Binds 1 Mg(2+) ion per subunit.|||Heterotetramer of two alpha and two beta subunits.|||Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. http://togogenome.org/gene/1313172:YM304_RS14400 ^@ http://purl.uniprot.org/uniprot/A0A6C7E617 ^@ Function|||Similarity ^@ Belongs to the dTDP-4-dehydrorhamnose reductase family.|||Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. http://togogenome.org/gene/1313172:YM304_RS10225 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7E5 ^@ Caution|||Cofactor|||Similarity|||Subunit ^@ Belongs to the CarB family.|||Binds 4 Mg(2+) or Mn(2+) ions per subunit.|||Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS02055 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9J6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS09030 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1V5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the arsenical resistance-3 (ACR3) (TC 2.A.59) family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS06355 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZR6 ^@ Function|||Similarity ^@ Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.|||Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L-serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate. http://togogenome.org/gene/1313172:YM304_RS19840 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED32 ^@ Similarity ^@ Belongs to the HMG-CoA lyase family. http://togogenome.org/gene/1313172:YM304_RS03780 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7B4 ^@ Similarity ^@ Belongs to the glycosyl hydrolase 2 family. http://togogenome.org/gene/1313172:YM304_RS04005 ^@ http://purl.uniprot.org/uniprot/A0A6C7E930 ^@ Function|||Similarity|||Subunit ^@ Belongs to the bacterial ribosomal protein bL12 family.|||Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation.|||Homodimer. Part of the ribosomal stalk of the 50S ribosomal subunit. Forms a multimeric L10(L12)X complex, where L10 forms an elongated spine to which 2 to 4 L12 dimers bind in a sequential fashion. Binds GTP-bound translation factors. http://togogenome.org/gene/1313172:YM304_RS06540 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4V7 ^@ Similarity|||Subunit ^@ Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS08065 ^@ http://purl.uniprot.org/uniprot/A0A6C7E779 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the polyribonucleotide nucleotidyltransferase family.|||Cytoplasm|||Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction. http://togogenome.org/gene/1313172:YM304_RS14295 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA00 ^@ Similarity ^@ Belongs to the phosphohexose mutase family. http://togogenome.org/gene/1313172:YM304_RS06910 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6G4 ^@ Similarity ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. http://togogenome.org/gene/1313172:YM304_RS04770 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7Y2 ^@ Cofactor|||Similarity ^@ Belongs to the carotenoid oxygenase family.|||Binds 1 Fe(2+) ion per subunit. http://togogenome.org/gene/1313172:YM304_RS22385 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB41 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the transglycosylase MltG family.|||Cell membrane|||Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. http://togogenome.org/gene/1313172:YM304_RS03235 ^@ http://purl.uniprot.org/uniprot/A0A6C7E711 ^@ Similarity ^@ Belongs to the iron/ascorbate-dependent oxidoreductase family. http://togogenome.org/gene/1313172:YM304_RS16085 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAV9 ^@ Similarity ^@ Belongs to the universal stress protein A family. http://togogenome.org/gene/1313172:YM304_RS13025 ^@ http://purl.uniprot.org/uniprot/A0A6C7EG01 ^@ Function|||Miscellaneous|||Similarity ^@ Belongs to the Pup ligase/Pup deamidase family. Pup-conjugating enzyme subfamily.|||Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine.|||The reaction mechanism probably proceeds via the activation of Pup by phosphorylation of its C-terminal glutamate, which is then subject to nucleophilic attack by the substrate lysine, resulting in an isopeptide bond and the release of phosphate as a good leaving group. http://togogenome.org/gene/1313172:YM304_RS04220 ^@ http://purl.uniprot.org/uniprot/A0A6C7E373 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS8 family.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.|||Part of the 30S ribosomal subunit. Contacts proteins S5 and S12. http://togogenome.org/gene/1313172:YM304_RS14655 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGZ5 ^@ Similarity ^@ Belongs to the ArsC family. http://togogenome.org/gene/1313172:YM304_RS19825 ^@ http://purl.uniprot.org/uniprot/A0A6C7EIA7 ^@ Similarity ^@ Belongs to the bacterial ribosomal protein bL33 family. http://togogenome.org/gene/1313172:YM304_RS19135 ^@ http://purl.uniprot.org/uniprot/A0A6C7E902 ^@ Cofactor|||Function|||PTM|||Similarity|||Subcellular Location Annotation ^@ Acts as a transcriptional regulator. Probably redox-responsive. The apo- but not holo-form probably binds DNA.|||Belongs to the WhiB family.|||Binds 1 [4Fe-4S] cluster per subunit. Following nitrosylation of the [4Fe-4S] cluster binds 1 [4Fe-8(NO)] cluster per subunit.|||Cytoplasm|||The Fe-S cluster can be nitrosylated by nitric oxide (NO).|||Upon Fe-S cluster removal intramolecular disulfide bonds are formed. http://togogenome.org/gene/1313172:YM304_RS07080 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECJ0 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the cytochrome ubiquinol oxidase subunit 2 family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS04750 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3H1 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/1313172:YM304_RS02350 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0C4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS00215 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6W5 ^@ Similarity ^@ Belongs to the universal stress protein A family. http://togogenome.org/gene/1313172:YM304_RS09750 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2H8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the FtsZ family.|||Cytoplasm|||Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.|||Homodimer. Polymerizes to form a dynamic ring structure in a strictly GTP-dependent manner. Interacts directly with several other division proteins. http://togogenome.org/gene/1313172:YM304_RS04430 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7Q7 ^@ Similarity ^@ Belongs to the universal ribosomal protein uS9 family. http://togogenome.org/gene/1313172:YM304_RS19490 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED13 ^@ Similarity ^@ Belongs to the iron-sulfur dependent L-serine dehydratase family. http://togogenome.org/gene/1313172:YM304_RS04255 ^@ http://purl.uniprot.org/uniprot/A0A6C7E315 ^@ Caution|||Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the adenylate kinase family.|||Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism.|||Consists of three domains, a large central CORE domain and two small peripheral domains, NMPbind and LID, which undergo movements during catalysis. The LID domain closes over the site of phosphoryl transfer upon ATP binding. Assembling and dissambling the active center during each catalytic cycle provides an effective means to prevent ATP hydrolysis. Some bacteria have evolved a zinc-coordinating structure that stabilizes the LID domain.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. http://togogenome.org/gene/1313172:YM304_RS12470 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4Q0 ^@ Activity Regulation|||Caution|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Allosterically activated by GTP, when glutamine is the substrate; GTP has no effect on the reaction when ammonia is the substrate. The allosteric effector GTP functions by stabilizing the protein conformation that binds the tetrahedral intermediate(s) formed during glutamine hydrolysis. Inhibited by the product CTP, via allosteric rather than competitive inhibition.|||Belongs to the CTP synthase family.|||CTPSs have evolved a hybrid strategy for distinguishing between UTP and CTP. The overlapping regions of the product feedback inhibitory and substrate sites recognize a common feature in both compounds, the triphosphate moiety. To differentiate isosteric substrate and product pyrimidine rings, an additional pocket far from the expected kinase/ligase catalytic site, specifically recognizes the cytosine and ribose portions of the product inhibitor.|||Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS07515 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6W7 ^@ Function|||Similarity ^@ Belongs to the trehalose phosphatase family.|||Removes the phosphate from trehalose 6-phosphate to produce free trehalose. http://togogenome.org/gene/1313172:YM304_RS13515 ^@ http://purl.uniprot.org/uniprot/A0A6C7E973 ^@ Function|||Similarity|||Subunit ^@ Belongs to the peptidase S24 family.|||Homodimer.|||Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. http://togogenome.org/gene/1313172:YM304_RS17015 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGH9 ^@ Similarity ^@ Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. http://togogenome.org/gene/1313172:YM304_RS07550 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9C9 ^@ Similarity ^@ Belongs to the fructosamine kinase family. http://togogenome.org/gene/1313172:YM304_RS14935 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDL9 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS09840 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8D3 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. FabI subfamily. http://togogenome.org/gene/1313172:YM304_RS05075 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2N5 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS19820 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBY6 ^@ Similarity ^@ Belongs to the SIMIBI class G3E GTPase family. ZNG1 subfamily. http://togogenome.org/gene/1313172:YM304_RS05760 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZ89 ^@ Similarity ^@ Belongs to the trans-sulfuration enzymes family. http://togogenome.org/gene/1313172:YM304_RS12160 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9P8 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS14750 ^@ http://purl.uniprot.org/uniprot/A0A6C7E696 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the DNA polymerase type-C family. DnaE2 subfamily.|||Cytoplasm|||DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. http://togogenome.org/gene/1313172:YM304_RS10155 ^@ http://purl.uniprot.org/uniprot/A0A6C7EED6 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the shikimate dehydrogenase family.|||Homodimer.|||Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS08905 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA46 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS14170 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEU0 ^@ Function|||Similarity ^@ Belongs to the PurU family.|||Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). http://togogenome.org/gene/1313172:YM304_RS08850 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5H1 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/1313172:YM304_RS16600 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBC8 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.|||Binds 2 Mg(2+) ions per subunit.|||Cytoplasm|||Homohexamer.|||Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P). http://togogenome.org/gene/1313172:YM304_RS15850 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAX5 ^@ Similarity ^@ Belongs to the aldehyde dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS13740 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9N7 ^@ Similarity ^@ Belongs to the zinc-containing alcohol dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS04200 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7F2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL14 family.|||Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.|||Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L19. In the 70S ribosome, L14 and L19 interact and together make contacts with the 16S rRNA in bridges B5 and B8. http://togogenome.org/gene/1313172:YM304_RS04160 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2Z8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL23 family.|||One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.|||Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome. http://togogenome.org/gene/1313172:YM304_RS05795 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4B8 ^@ Function|||Similarity ^@ Belongs to the CobT family.|||Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). http://togogenome.org/gene/1313172:YM304_RS24675 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBN1 ^@ Similarity ^@ Belongs to the universal stress protein A family. http://togogenome.org/gene/1313172:YM304_RS16580 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEL7 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.|||Cytoplasm|||Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. http://togogenome.org/gene/1313172:YM304_RS13895 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9S1 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the HAM1 NTPase family.|||Binds 1 Mg(2+) ion per subunit.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. http://togogenome.org/gene/1313172:YM304_RS07995 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB99 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS21960 ^@ http://purl.uniprot.org/uniprot/A0A6C7E965 ^@ Similarity ^@ Belongs to the Cu-Zn superoxide dismutase family. http://togogenome.org/gene/1313172:YM304_RS20145 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDE2 ^@ Similarity ^@ Belongs to the FGGY kinase family. http://togogenome.org/gene/1313172:YM304_RS03995 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAQ0 ^@ Similarity ^@ Belongs to the AfsR/DnrI/RedD regulatory family. http://togogenome.org/gene/1313172:YM304_RS09595 ^@ http://purl.uniprot.org/uniprot/A0A6C7E875 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PPase family.|||Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.|||Cytoplasm|||Homohexamer. http://togogenome.org/gene/1313172:YM304_RS09355 ^@ http://purl.uniprot.org/uniprot/A0A6C7E257 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GTP-binding SRP family. FtsY subfamily.|||Cell membrane|||Cytoplasm|||Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).|||Membrane|||Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. http://togogenome.org/gene/1313172:YM304_RS20940 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECJ4 ^@ Similarity ^@ Belongs to the LppX/LprAFG lipoprotein family. http://togogenome.org/gene/1313172:YM304_RS07165 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5K1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the bacterial sugar transferase family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS18430 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDC4 ^@ Function|||Similarity ^@ Belongs to the 2H phosphoesterase superfamily. ThpR family.|||Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'-phosphomonoester. http://togogenome.org/gene/1313172:YM304_RS10025 ^@ http://purl.uniprot.org/uniprot/A0A6C7E797 ^@ Similarity ^@ Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/1313172:YM304_RS10845 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7L8 ^@ Similarity ^@ Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS06410 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8X4 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ABC-2 integral membrane protein family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS10405 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEJ3 ^@ Similarity ^@ Belongs to the aspartate/ornithine carbamoyltransferase superfamily. http://togogenome.org/gene/1313172:YM304_RS06565 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC91 ^@ Function|||Similarity ^@ Catalyzes the radical-mediated synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) from 5-amino-6-(D-ribitylamino)uracil and L-tyrosine.|||In the C-terminal section; belongs to the radical SAM superfamily. CofH family.|||In the N-terminal section; belongs to the radical SAM superfamily. CofG family. http://togogenome.org/gene/1313172:YM304_RS20985 ^@ http://purl.uniprot.org/uniprot/A0A6C7EKM6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the PurK/PurT family.|||Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).|||Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)- to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS00010 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8F4 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the beta sliding clamp family.|||Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.|||Cytoplasm|||Forms a ring-shaped head-to-tail homodimer around DNA. http://togogenome.org/gene/1313172:YM304_RS09975 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAS5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the purine/pyrimidine phosphoribosyltransferase family.|||Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS20755 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDK5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS10190 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7K6 ^@ Function|||Similarity ^@ Belongs to the NusB family.|||Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. http://togogenome.org/gene/1313172:YM304_RS01180 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0Q0 ^@ Similarity ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. http://togogenome.org/gene/1313172:YM304_RS18825 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECG7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the MscS (TC 1.A.23) family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS10160 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6D9 ^@ Similarity ^@ Belongs to the LysR transcriptional regulatory family. http://togogenome.org/gene/1313172:YM304_RS04400 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7J6 ^@ Domain|||Function|||Similarity|||Subunit ^@ Belongs to the RNA polymerase alpha chain family.|||DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Homodimer. The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.|||The N-terminal domain is essential for RNAP assembly and basal transcription, whereas the C-terminal domain is involved in interaction with transcriptional regulators and with upstream promoter elements. http://togogenome.org/gene/1313172:YM304_RS02680 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1Q5 ^@ Similarity ^@ Belongs to the homogentisate dioxygenase family. http://togogenome.org/gene/1313172:YM304_RS18605 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBA6 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. Thiolase family. http://togogenome.org/gene/1313172:YM304_RS09250 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7Z7 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.|||Binds 1 Mn(2+) ion per subunit.|||Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle.|||Cytoplasm|||Monomer. http://togogenome.org/gene/1313172:YM304_RS11845 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8D5 ^@ Function|||Similarity ^@ Belongs to the GART family.|||Catalyzes the transfer of a formyl group from 10-formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. http://togogenome.org/gene/1313172:YM304_RS06280 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAB7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS17085 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECJ2 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS04835 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9J2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the CcmF/CycK/Ccl1/NrfE/CcsA family.|||Cell inner membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS25045 ^@ http://purl.uniprot.org/uniprot/A0A6C7E733 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the glycosyltransferase 28 family. MurG subfamily.|||Cell membrane|||Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc-(pentapeptide)GlcNAc (lipid intermediate II).|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS02135 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2S8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the complex I subunit 4 family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS12300 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8P2 ^@ Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the pantothenate synthetase family.|||Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate.|||Cytoplasm|||Homodimer.|||The reaction proceeds by a bi uni uni bi ping pong mechanism. http://togogenome.org/gene/1313172:YM304_RS11745 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDF7 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the glutamate 5-kinase family.|||Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS16155 ^@ http://purl.uniprot.org/uniprot/A0A6C7E780 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS20610 ^@ http://purl.uniprot.org/uniprot/A0A6C7EER2 ^@ Similarity ^@ Belongs to the bacterial solute-binding protein 1 family. http://togogenome.org/gene/1313172:YM304_RS00670 ^@ http://purl.uniprot.org/uniprot/A0A6C7E765 ^@ Similarity ^@ Belongs to the GSP E family. http://togogenome.org/gene/1313172:YM304_RS20340 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED34 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the TVP38/TMEM64 family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS10415 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECN1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS02085 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2R2 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I 30 kDa subunit family.|||Cell membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/1313172:YM304_RS18370 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC69 ^@ Similarity ^@ Belongs to the HSP15 family. http://togogenome.org/gene/1313172:YM304_RS07410 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5H3 ^@ Similarity ^@ Belongs to the pterin-4-alpha-carbinolamine dehydratase family. http://togogenome.org/gene/1313172:YM304_RS00430 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1J2 ^@ Cofactor|||Similarity ^@ Belongs to the carotenoid oxygenase family.|||Binds 1 Fe(2+) ion per subunit. http://togogenome.org/gene/1313172:YM304_RS05170 ^@ http://purl.uniprot.org/uniprot/A0A6C7E865 ^@ Function|||Similarity|||Subunit ^@ Belongs to the Orn/Lys/Arg decarboxylase class-II family. LysA subfamily.|||Homodimer.|||Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine. http://togogenome.org/gene/1313172:YM304_RS07415 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5F5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS19105 ^@ http://purl.uniprot.org/uniprot/A0A6C7EHU7 ^@ Subunit ^@ Heterodimer of an alpha and a beta chain. http://togogenome.org/gene/1313172:YM304_RS05925 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3A3 ^@ Similarity ^@ Belongs to the pirin family. http://togogenome.org/gene/1313172:YM304_RS02440 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1P0 ^@ Similarity ^@ Belongs to the aldehyde dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS18840 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECM6 ^@ Similarity ^@ Belongs to the anti-sigma-factor antagonist family. http://togogenome.org/gene/1313172:YM304_RS01520 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0Z4 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS16955 ^@ http://purl.uniprot.org/uniprot/A0A6C7EF85 ^@ Function|||Similarity|||Subunit ^@ Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).|||Belongs to the amidase family. GatA subfamily.|||Heterotrimer of A, B and C subunits. http://togogenome.org/gene/1313172:YM304_RS04000 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1V0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL10 family.|||Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.|||Part of the ribosomal stalk of the 50S ribosomal subunit. The N-terminus interacts with L11 and the large rRNA to form the base of the stalk. The C-terminus forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex. http://togogenome.org/gene/1313172:YM304_RS13050 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8Y0 ^@ Similarity ^@ Belongs to the Pup ligase/Pup deamidase family. Pup deamidase subfamily. http://togogenome.org/gene/1313172:YM304_RS15665 ^@ http://purl.uniprot.org/uniprot/A0A6C7EHI2 ^@ Similarity ^@ Belongs to the histone deacetylase family. http://togogenome.org/gene/1313172:YM304_RS05610 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZ46 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS19975 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGN6 ^@ Cofactor|||Similarity ^@ Belongs to the carotenoid oxygenase family.|||Binds 1 Fe(2+) ion per subunit. http://togogenome.org/gene/1313172:YM304_RS01335 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5K0 ^@ Similarity ^@ Belongs to the GPN-loop GTPase family. http://togogenome.org/gene/1313172:YM304_RS20890 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECI4 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Also exhibits azoreductase activity. Catalyzes the reductive cleavage of the azo bond in aromatic azo compounds to the corresponding amines.|||Belongs to the azoreductase type 1 family.|||Binds 1 FMN per subunit.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Quinone reductase that provides resistance to thiol-specific stress caused by electrophilic quinones. http://togogenome.org/gene/1313172:YM304_RS08875 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6Q7 ^@ Similarity ^@ Belongs to the pirin family. http://togogenome.org/gene/1313172:YM304_RS13990 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9G7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the autoinducer-2 exporter (AI-2E) (TC 2.A.86) family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS22530 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBY0 ^@ Similarity ^@ Belongs to the FPG family. http://togogenome.org/gene/1313172:YM304_RS04250 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7G3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SecY/SEC61-alpha family.|||Cell membrane|||Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.|||Membrane|||The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. http://togogenome.org/gene/1313172:YM304_RS09930 ^@ http://purl.uniprot.org/uniprot/A0A6C7E773 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RuvC family.|||Binds 2 Mg(2+) ion per subunit.|||Cytoplasm|||Homodimer which binds Holliday junction (HJ) DNA. The HJ becomes 2-fold symmetrical on binding to RuvC with unstacked arms; it has a different conformation from HJ DNA in complex with RuvA. In the full resolvosome a probable DNA-RuvA(4)-RuvB(12)-RuvC(2) complex forms which resolves the HJ.|||The RuvA-RuvB-RuvC complex processes Holliday junction (HJ) DNA during genetic recombination and DNA repair. Endonuclease that resolves HJ intermediates. Cleaves cruciform DNA by making single-stranded nicks across the HJ at symmetrical positions within the homologous arms, yielding a 5'-phosphate and a 3'-hydroxyl group; requires a central core of homology in the junction. The consensus cleavage sequence is 5'-(A/T)TT(C/G)-3'. Cleavage occurs on the 3'-side of the TT dinucleotide at the point of strand exchange. HJ branch migration catalyzed by RuvA-RuvB allows RuvC to scan DNA until it finds its consensus sequence, where it cleaves and resolves the cruciform DNA. http://togogenome.org/gene/1313172:YM304_RS04975 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBB3 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the ETF alpha-subunit/FixB family.|||Binds 1 FAD per dimer.|||Heterodimer of an alpha and a beta subunit.|||The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase). http://togogenome.org/gene/1313172:YM304_RS09335 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6U9 ^@ Function|||PTM|||Similarity|||Subcellular Location Annotation ^@ 4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by AcpS. This modification is essential for activity because fatty acids are bound in thioester linkage to the sulfhydryl of the prosthetic group.|||Belongs to the acyl carrier protein (ACP) family.|||Carrier of the growing fatty acid chain in fatty acid biosynthesis.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS24630 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3T5 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the GTP cyclohydrolase II family.|||Binds 1 zinc ion per subunit.|||Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate. http://togogenome.org/gene/1313172:YM304_RS05585 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8A4 ^@ Similarity ^@ Belongs to the UPRTase family. http://togogenome.org/gene/1313172:YM304_RS16105 ^@ http://purl.uniprot.org/uniprot/A0A6C7E768 ^@ Similarity ^@ Belongs to the carbohydrate kinase PfkB family. http://togogenome.org/gene/1313172:YM304_RS18230 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC43 ^@ Similarity ^@ Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS06515 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC81 ^@ Similarity ^@ Belongs to the alpha-IPM synthase/homocitrate synthase family. http://togogenome.org/gene/1313172:YM304_RS00240 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZY4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS09540 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6W1 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the anthranilate phosphoribosyltransferase family.|||Binds 2 magnesium ions per monomer.|||Catalyzes the transfer of the phosphoribosyl group of 5-phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA).|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS08705 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA09 ^@ Similarity ^@ Belongs to the universal stress protein A family. http://togogenome.org/gene/1313172:YM304_RS10165 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECI5 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the chorismate synthase family.|||Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.|||Homotetramer.|||Reduced FMN (FMNH(2)). http://togogenome.org/gene/1313172:YM304_RS04235 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAV7 ^@ Domain|||Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS5 family.|||Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.|||Part of the 30S ribosomal subunit. Contacts proteins S4 and S8.|||The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.|||With S4 and S12 plays an important role in translational accuracy. http://togogenome.org/gene/1313172:YM304_RS12035 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFG6 ^@ Similarity ^@ Belongs to the isochorismate synthase family. http://togogenome.org/gene/1313172:YM304_RS05465 ^@ http://purl.uniprot.org/uniprot/A0A6C7E491 ^@ Similarity ^@ Belongs to the peptidase U62 family. http://togogenome.org/gene/1313172:YM304_RS16640 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAX7 ^@ Activity Regulation|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the enolase family.|||Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.|||Cell surface|||Cytoplasm|||Secreted|||The covalent binding to the substrate causes inactivation of the enzyme, and possibly serves as a signal for the export of the protein. http://togogenome.org/gene/1313172:YM304_RS21330 ^@ http://purl.uniprot.org/uniprot/A0A6C7EHX6 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS13970 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEP9 ^@ Similarity ^@ Belongs to the iron/ascorbate-dependent oxidoreductase family. http://togogenome.org/gene/1313172:YM304_RS12240 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDQ6 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS09920 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECE1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the TACO1 family.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS04190 ^@ http://purl.uniprot.org/uniprot/A0A6C7E206 ^@ Similarity ^@ Belongs to the universal ribosomal protein uL29 family. http://togogenome.org/gene/1313172:YM304_RS12830 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECL8 ^@ Similarity ^@ Belongs to the arginase family. Agmatinase subfamily. http://togogenome.org/gene/1313172:YM304_RS12970 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECP9 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS24845 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7N1 ^@ Similarity ^@ Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. http://togogenome.org/gene/1313172:YM304_RS11370 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3T0 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PRA-CH family.|||Binds 1 Mg(2+) ion per subunit.|||Binds 1 zinc ion per subunit.|||Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS08495 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDC9 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Also exhibits azoreductase activity. Catalyzes the reductive cleavage of the azo bond in aromatic azo compounds to the corresponding amines.|||Belongs to the azoreductase type 1 family.|||Binds 1 FMN per subunit.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Quinone reductase that provides resistance to thiol-specific stress caused by electrophilic quinones. http://togogenome.org/gene/1313172:YM304_RS11935 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDK1 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the AB hydrolase superfamily. MetX family.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine. http://togogenome.org/gene/1313172:YM304_RS05335 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9T6 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the ATPase alpha/beta chains family.|||Cell membrane|||Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. http://togogenome.org/gene/1313172:YM304_RS10920 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBJ2 ^@ Similarity ^@ Belongs to the FAD-binding monooxygenase family. http://togogenome.org/gene/1313172:YM304_RS05945 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4G0 ^@ Similarity ^@ Belongs to the AHA1 family. http://togogenome.org/gene/1313172:YM304_RS02175 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1B1 ^@ Similarity ^@ Belongs to the AHA1 family. http://togogenome.org/gene/1313172:YM304_RS00515 ^@ http://purl.uniprot.org/uniprot/A0A6C7E734 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS25645 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2Y3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL4 family.|||Forms part of the polypeptide exit tunnel.|||One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/1313172:YM304_RS03875 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7D3 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.|||Cell membrane|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane|||Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane. http://togogenome.org/gene/1313172:YM304_RS03345 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2A5 ^@ Cofactor|||PTM|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.|||Binds 2 nickel ions per subunit.|||Carbamylation allows a single lysine to coordinate two nickel ions.|||Carboxylation allows a single lysine to coordinate two nickel ions.|||Cytoplasm|||Heterotrimer of UreA (gamma), UreB (beta) and UreC (alpha) subunits. Three heterotrimers associate to form the active enzyme. http://togogenome.org/gene/1313172:YM304_RS13815 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEL0 ^@ Similarity ^@ Belongs to the Mg-chelatase subunits D/I family. ComM subfamily. http://togogenome.org/gene/1313172:YM304_RS01395 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0P1 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS05365 ^@ http://purl.uniprot.org/uniprot/A0A6C7DYR5 ^@ Similarity ^@ Belongs to the FBPase class 2 family. http://togogenome.org/gene/1313172:YM304_RS13560 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9F0 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the RecA family.|||Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS08245 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9R3 ^@ Similarity ^@ Belongs to the iron/ascorbate-dependent oxidoreductase family. http://togogenome.org/gene/1313172:YM304_RS09370 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5V8 ^@ Similarity ^@ Belongs to the bacterial ribosomal protein bS16 family. http://togogenome.org/gene/1313172:YM304_RS14405 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDI9 ^@ Function|||Similarity ^@ Belongs to the glucose-1-phosphate thymidylyltransferase family.|||Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. http://togogenome.org/gene/1313172:YM304_RS03310 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2E5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS11740 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7E4 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.|||Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.|||Cytoplasm|||Monomer. http://togogenome.org/gene/1313172:YM304_RS09860 ^@ http://purl.uniprot.org/uniprot/A0A6C7EE87 ^@ Caution|||Cofactor|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family.|||Binds 1 zinc ion per subunit.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS12250 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8M5 ^@ Similarity ^@ Belongs to the glutamate synthase family. http://togogenome.org/gene/1313172:YM304_RS19180 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECU7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS04485 ^@ http://purl.uniprot.org/uniprot/A0A6C7E292 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the TsaE family.|||Cytoplasm|||Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaD and TsaB. TsaE seems to play an indirect role in the t(6)A biosynthesis pathway, possibly in regulating the core enzymatic function of TsaD. http://togogenome.org/gene/1313172:YM304_RS23405 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4P0 ^@ Similarity ^@ Belongs to the AHA1 family. http://togogenome.org/gene/1313172:YM304_RS14075 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED62 ^@ Similarity|||Subunit ^@ Belongs to the sigma-70 factor family. ECF subfamily.|||Interacts transiently with the RNA polymerase catalytic core formed by RpoA, RpoB, RpoC and RpoZ (2 alpha, 1 beta, 1 beta' and 1 omega subunit) to form the RNA polymerase holoenzyme that can initiate transcription. http://togogenome.org/gene/1313172:YM304_RS01195 ^@ http://purl.uniprot.org/uniprot/A0A6C7DUK3 ^@ Similarity ^@ Belongs to the AfsR/DnrI/RedD regulatory family. http://togogenome.org/gene/1313172:YM304_RS20275 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGU0 ^@ Similarity ^@ Belongs to the phosphate/phosphite/phosphonate binding protein family. http://togogenome.org/gene/1313172:YM304_RS03410 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2H2 ^@ Activity Regulation|||Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the fluoride channel Fluc/FEX (TC 1.A.43) family.|||Cell membrane|||Fluoride-specific ion channel. Important for reducing fluoride concentration in the cell, thus reducing its toxicity.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane|||Na(+) is not transported, but it plays an essential structural role and its presence is essential for fluoride channel function. http://togogenome.org/gene/1313172:YM304_RS12660 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA02 ^@ Subcellular Location Annotation ^@ Endoplasmic reticulum membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS10470 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEK3 ^@ Similarity ^@ Belongs to the bacterial solute-binding protein 9 family. http://togogenome.org/gene/1313172:YM304_RS01760 ^@ http://purl.uniprot.org/uniprot/A0A6C7E162 ^@ Function|||Similarity ^@ Belongs to the thymidylate kinase family.|||Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis. http://togogenome.org/gene/1313172:YM304_RS13905 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED82 ^@ Function|||Similarity ^@ Belongs to the aspartate/glutamate racemases family.|||Provides the (R)-glutamate required for cell wall biosynthesis. http://togogenome.org/gene/1313172:YM304_RS04035 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7G7 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the RNA polymerase beta' chain family.|||Binds 1 Mg(2+) ion per subunit.|||Binds 2 Zn(2+) ions per subunit.|||DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription. http://togogenome.org/gene/1313172:YM304_RS07790 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4R1 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS05330 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2V1 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the ATPase delta chain family.|||Cell membrane|||F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.|||This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction. http://togogenome.org/gene/1313172:YM304_RS10080 ^@ http://purl.uniprot.org/uniprot/A0A6C7E775 ^@ Similarity ^@ Belongs to the peptidase M18 family. http://togogenome.org/gene/1313172:YM304_RS09275 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5S9 ^@ Function|||Similarity ^@ Belongs to the helicase family. RecG subfamily.|||Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA). http://togogenome.org/gene/1313172:YM304_RS10395 ^@ http://purl.uniprot.org/uniprot/A0A6C7E307 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the acetylglutamate kinase family. ArgB subfamily.|||Catalyzes the ATP-dependent phosphorylation of N-acetyl-L-glutamate.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS16315 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA16 ^@ Similarity ^@ Belongs to the glycosyl hydrolase 32 family. http://togogenome.org/gene/1313172:YM304_RS15625 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFN8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS19175 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDT8 ^@ Similarity ^@ Belongs to the ABC transporter superfamily. http://togogenome.org/gene/1313172:YM304_RS06470 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3Q3 ^@ Function|||Similarity ^@ Belongs to the NadC/ModD family.|||Involved in the catabolism of quinolinic acid (QA). http://togogenome.org/gene/1313172:YM304_RS13335 ^@ http://purl.uniprot.org/uniprot/A0A6C7EG56 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS09045 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5M0 ^@ Similarity ^@ Belongs to the UPF0051 (ycf24) family. http://togogenome.org/gene/1313172:YM304_RS09725 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC99 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MurCDEF family.|||Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS09720 ^@ http://purl.uniprot.org/uniprot/A0A6C7E643 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the glycosyltransferase 4 family. MraY subfamily.|||Catalyzes the initial step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan: transfers peptidoglycan precursor phospho-MurNAc-pentapeptide from UDP-MurNAc-pentapeptide onto the lipid carrier undecaprenyl phosphate, yielding undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide, known as lipid I.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS14945 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA04 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RNase H family.|||Binds 1 Mg(2+) ion per subunit. May bind a second metal ion at a regulatory site, or after substrate binding.|||Cytoplasm|||Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.|||Monomer. http://togogenome.org/gene/1313172:YM304_RS20620 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9T5 ^@ Similarity ^@ Belongs to the glycosyl hydrolase 1 family. http://togogenome.org/gene/1313172:YM304_RS07990 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4W5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS09770 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECB5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the DivIVA family.|||Belongs to the V-ATPase E subunit family.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS21510 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDQ7 ^@ Caution|||Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ A probable RNA chaperone. Forms a complex with KhpA which binds to cellular RNA and controls its expression. Plays a role in peptidoglycan (PG) homeostasis and cell length regulation.|||Belongs to the KhpB RNA-binding protein family.|||Cytoplasm|||Forms a complex with KhpA.|||Has an N-terminal Jag-N domain and 2 RNA-binding domains (KH and R3H).|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS12775 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECL1 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS09515 ^@ http://purl.uniprot.org/uniprot/A0A6C7EE23 ^@ Similarity ^@ Belongs to the FGGY kinase family. http://togogenome.org/gene/1313172:YM304_RS17525 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGT3 ^@ Caution|||Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 2 subfamily.|||Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer.|||ValRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated threonine is translocated from the active site to the editing site. http://togogenome.org/gene/1313172:YM304_RS00250 ^@ http://purl.uniprot.org/uniprot/A0A6C7E522 ^@ Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. http://togogenome.org/gene/1313172:YM304_RS14090 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAT8 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS03325 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAB6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS03885 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1S0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PhoU family.|||Cytoplasm|||Homodimer.|||Plays a role in the regulation of phosphate uptake. http://togogenome.org/gene/1313172:YM304_RS14060 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGM5 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the HAD-like hydrolase superfamily. MasA/MtnC family.|||Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).|||Binds 1 Mg(2+) ion per subunit.|||Monomer. http://togogenome.org/gene/1313172:YM304_RS01625 ^@ http://purl.uniprot.org/uniprot/A0A6C7DUZ9 ^@ Function|||Similarity ^@ Belongs to the aspartokinase family.|||Catalyzes the phosphorylation of the beta-carboxyl group of aspartic acid with ATP to yield 4-phospho-L-aspartate, which is involved in the branched biosynthetic pathway leading to the biosynthesis of amino acids lysine, threonine, isoleucine and methionine. http://togogenome.org/gene/1313172:YM304_RS21390 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECT5 ^@ Caution|||Subunit ^@ Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS16490 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC70 ^@ Similarity ^@ Belongs to the PAPS reductase family. CysD subfamily. http://togogenome.org/gene/1313172:YM304_RS22430 ^@ http://purl.uniprot.org/uniprot/A0A6C7E937 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS04075 ^@ http://purl.uniprot.org/uniprot/A0A6C7E324 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS12 family.|||Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.|||Part of the 30S ribosomal subunit. Contacts proteins S8 and S17. May interact with IF1 in the 30S initiation complex.|||With S4 and S5 plays an important role in translational accuracy. http://togogenome.org/gene/1313172:YM304_RS16615 ^@ http://purl.uniprot.org/uniprot/A0A6C7EI22 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site.|||Cytoplasm|||In the C-terminal section; belongs to the helicase family. RecG subfamily.|||In the N-terminal section; belongs to the UvrB family. http://togogenome.org/gene/1313172:YM304_RS13985 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9N6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the autoinducer-2 exporter (AI-2E) (TC 2.A.86) family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS10555 ^@ http://purl.uniprot.org/uniprot/A0A6C7E352 ^@ Cofactor|||Similarity ^@ Belongs to the DNA photolyase family.|||Binds 1 FAD per subunit. http://togogenome.org/gene/1313172:YM304_RS10870 ^@ http://purl.uniprot.org/uniprot/A0A6C7EES9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS21165 ^@ http://purl.uniprot.org/uniprot/A0A6C7EF34 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS05390 ^@ http://purl.uniprot.org/uniprot/A0A6C7E862 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS06975 ^@ http://purl.uniprot.org/uniprot/A0A6C7E982 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS10355 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEI1 ^@ Cofactor|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.|||Binds 2 magnesium ions per tetramer.|||Cytoplasm|||Tetramer of two alpha and two beta subunits. http://togogenome.org/gene/1313172:YM304_RS18010 ^@ http://purl.uniprot.org/uniprot/A0A6C7EIW4 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS06575 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAH2 ^@ Cofactor|||Function|||Similarity ^@ Binds 1 zinc ion.|||Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate.|||In the C-terminal section; belongs to the HTP reductase family.|||In the N-terminal section; belongs to the cytidine and deoxycytidylate deaminase family. http://togogenome.org/gene/1313172:YM304_RS16300 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7B1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS11485 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3W3 ^@ Similarity ^@ Belongs to the Gfa family. http://togogenome.org/gene/1313172:YM304_RS07735 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECW3 ^@ Cofactor|||Domain|||Function|||Similarity ^@ Belongs to the nitrobindin family.|||Binds 1 heme b group per subunit, that coordinates a highly solvent-exposed Fe(III) atom.|||Forms a 10-stranded antiparallel beta-barrel structure able to accommodate a hydrophobic ligand in its interior. In fact, this fold hosts the heme group, which is located in a wide surface cleft.|||Heme-binding protein able to scavenge peroxynitrite and to protect free L-tyrosine against peroxynitrite-mediated nitration, by acting as a peroxynitrite isomerase that converts peroxynitrite to nitrate. Therefore, this protein likely plays a role in peroxynitrite sensing and in the detoxification of reactive nitrogen and oxygen species (RNS and ROS, respectively). Is able to bind nitric oxide (NO) in vitro, but may act as a sensor of peroxynitrite levels in vivo. http://togogenome.org/gene/1313172:YM304_RS17845 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC34 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the complex I subunit 6 family.|||Cell membrane|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/1313172:YM304_RS12490 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDV0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS09050 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBV2 ^@ Similarity ^@ Belongs to the ABC transporter superfamily. Ycf16 family. http://togogenome.org/gene/1313172:YM304_RS17830 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBV6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the complex I subunit 4 family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS17345 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFH7 ^@ Subcellular Location Annotation ^@ Cytoplasm http://togogenome.org/gene/1313172:YM304_RS06725 ^@ http://purl.uniprot.org/uniprot/A0A6C7E932 ^@ Similarity ^@ Belongs to the thioester dehydratase family. FabA subfamily. http://togogenome.org/gene/1313172:YM304_RS15805 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6Y6 ^@ Similarity ^@ Belongs to the zinc-containing alcohol dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS16045 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBY4 ^@ Similarity ^@ Belongs to the Glu/Leu/Phe/Val dehydrogenases family. http://togogenome.org/gene/1313172:YM304_RS10530 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECS5 ^@ Function|||Similarity ^@ Belongs to the bacterial ribosomal protein bS20 family.|||Binds directly to 16S ribosomal RNA. http://togogenome.org/gene/1313172:YM304_RS12215 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8S1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the aconitase/IPM isomerase family.|||Mitochondrion http://togogenome.org/gene/1313172:YM304_RS18175 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFJ7 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/1313172:YM304_RS13960 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGK3 ^@ Similarity ^@ Belongs to the pirin family. http://togogenome.org/gene/1313172:YM304_RS04880 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2I6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the Mrp/NBP35 ATP-binding proteins family.|||Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP.|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS04395 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9A3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS4 family.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.|||Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.|||With S5 and S12 plays an important role in translational accuracy. http://togogenome.org/gene/1313172:YM304_RS15945 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBW4 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the GDT1 family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS10480 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECR7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ABC-3 integral membrane protein family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS17485 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBP2 ^@ Cofactor|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Binds 1 zinc ion per subunit.|||Cytoplasm|||Monomer. http://togogenome.org/gene/1313172:YM304_RS07880 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9Q9 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ A 50S ribosomal subunit assembly protein with GTPase activity, required for 50S subunit assembly at low temperatures, may also play a role in translation. Binds GTP and analogs. Binds the 70S ribosome between the 30S and 50S subunits, in a similar position as ribosome-bound EF-G; it contacts a number of ribosomal proteins, both rRNAs and the A-site tRNA.|||Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. BipA subfamily.|||Cytoplasm|||Monomer. http://togogenome.org/gene/1313172:YM304_RS10740 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7Q2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS05860 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZB8 ^@ Similarity ^@ Belongs to the 6-phosphogluconate dehydrogenase family.|||Belongs to the HIBADH-related family. http://togogenome.org/gene/1313172:YM304_RS08615 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6C5 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS19830 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGL1 ^@ Similarity|||Subunit ^@ Belongs to the bacterial ribosomal protein bL31 family. Type B subfamily.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/1313172:YM304_RS15495 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBM5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS05445 ^@ http://purl.uniprot.org/uniprot/A0A6C7E410 ^@ Cofactor|||Similarity ^@ Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.|||Binds 1 Fe cation per subunit.|||Binds 1 zinc ion per subunit. http://togogenome.org/gene/1313172:YM304_RS06325 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAC4 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS06885 ^@ http://purl.uniprot.org/uniprot/A0A6C7E425 ^@ Function|||Similarity ^@ Belongs to the PINc/VapC protein family.|||Toxic component of a toxin-antitoxin (TA) system. An RNase. http://togogenome.org/gene/1313172:YM304_RS09545 ^@ http://purl.uniprot.org/uniprot/A0A6C7E864 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the GHMP kinase family. Homoserine kinase subfamily.|||Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS10485 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB29 ^@ Cofactor|||Similarity ^@ Belongs to the Fur family.|||Binds 1 zinc ion per subunit. http://togogenome.org/gene/1313172:YM304_RS18130 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC22 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS15430 ^@ http://purl.uniprot.org/uniprot/A0A6C7EE00 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS09620 ^@ http://purl.uniprot.org/uniprot/A0A6C7E618 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.|||Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.|||Cytoplasm|||Homodimer or homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS18490 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8L8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS11375 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBS6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the anthranilate synthase component I family.|||Heterotetramer consisting of two non-identical subunits: a beta subunit (TrpG) and a large alpha subunit (TrpE).|||Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia. http://togogenome.org/gene/1313172:YM304_RS13345 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEB8 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS21725 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7R9 ^@ Similarity ^@ Belongs to the F420H(2)-dependent quinone reductase family. http://togogenome.org/gene/1313172:YM304_RS14520 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDF5 ^@ Cofactor ^@ Binds 1 Mg(2+) ion per subunit. http://togogenome.org/gene/1313172:YM304_RS09330 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAE3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PlsX family.|||Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.|||Cytoplasm|||Homodimer. Probably interacts with PlsY. http://togogenome.org/gene/1313172:YM304_RS19035 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECR1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS03930 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAN9 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PanB family.|||Binds 1 Mg(2+) ion per subunit.|||Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate.|||Cytoplasm|||Homodecamer; pentamer of dimers. http://togogenome.org/gene/1313172:YM304_RS14205 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDE9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.|||Membrane http://togogenome.org/gene/1313172:YM304_RS20075 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGQ4 ^@ Similarity ^@ In the N-terminal section; belongs to the NADH:flavin oxidoreductase/NADH oxidase family. http://togogenome.org/gene/1313172:YM304_RS19050 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBK0 ^@ Function|||Similarity ^@ Belongs to the beta-class carbonic anhydrase family.|||Catalyzes the reversible hydration of carbon dioxide to form bicarbonate. http://togogenome.org/gene/1313172:YM304_RS16030 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEB1 ^@ Similarity|||Subunit ^@ Belongs to the glutaminase family.|||Homotetramer. http://togogenome.org/gene/1313172:YM304_RS19350 ^@ http://purl.uniprot.org/uniprot/A0A6C7EI04 ^@ Subcellular Location Annotation ^@ Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS16585 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB61 ^@ Function|||Similarity ^@ Belongs to the GHMP kinase family. IspE subfamily.|||Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. http://togogenome.org/gene/1313172:YM304_RS10420 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB19 ^@ Similarity ^@ Belongs to the DNA glycosylase MPG family. http://togogenome.org/gene/1313172:YM304_RS15895 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBV5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS19145 ^@ http://purl.uniprot.org/uniprot/A0A6C7EJJ6 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the SelA family.|||Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS16970 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGH0 ^@ Similarity ^@ Belongs to the citrate synthase family. http://togogenome.org/gene/1313172:YM304_RS21885 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2F7 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the UreD family.|||Cytoplasm|||Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.|||UreD, UreF and UreG form a complex that acts as a GTP-hydrolysis-dependent molecular chaperone, activating the urease apoprotein by helping to assemble the nickel containing metallocenter of UreC. The UreE protein probably delivers the nickel. http://togogenome.org/gene/1313172:YM304_RS05620 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBP0 ^@ Similarity ^@ Belongs to the BMP lipoprotein family. http://togogenome.org/gene/1313172:YM304_RS11310 ^@ http://purl.uniprot.org/uniprot/A0A6C7E981 ^@ Cofactor|||Similarity ^@ Belongs to the peptidase M3 family.|||Binds 1 zinc ion. http://togogenome.org/gene/1313172:YM304_RS04195 ^@ http://purl.uniprot.org/uniprot/A0A6C7E971 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS17 family.|||One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/1313172:YM304_RS19170 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECE0 ^@ Caution|||Function|||Similarity ^@ Belongs to the NAD synthetase family.|||Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.|||In the C-terminal section; belongs to the NAD synthetase family.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS02095 ^@ http://purl.uniprot.org/uniprot/A0A6C7DVF7 ^@ Cofactor|||Similarity ^@ Belongs to the complex I 24 kDa subunit family.|||Binds 1 [2Fe-2S] cluster. http://togogenome.org/gene/1313172:YM304_RS15905 ^@ http://purl.uniprot.org/uniprot/A0A6C7E710 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the xylose isomerase family.|||Cytoplasm|||Homotetramer. http://togogenome.org/gene/1313172:YM304_RS12020 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8N4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the AB hydrolase superfamily. MenH family.|||Catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC).|||Monomer. http://togogenome.org/gene/1313172:YM304_RS09700 ^@ http://purl.uniprot.org/uniprot/A0A6C7E793 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the methyltransferase superfamily. RsmH family.|||Cytoplasm|||Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. http://togogenome.org/gene/1313172:YM304_RS03770 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2T4 ^@ Similarity ^@ Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. http://togogenome.org/gene/1313172:YM304_RS08190 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBD3 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS03475 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAF6 ^@ Similarity ^@ Belongs to the peptidase S8 family. http://togogenome.org/gene/1313172:YM304_RS03535 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1G2 ^@ Similarity ^@ Belongs to the metallo-beta-lactamase superfamily. Type III sulfatase family. http://togogenome.org/gene/1313172:YM304_RS15835 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAR1 ^@ Function ^@ TetR is the repressor of the tetracycline resistance element; its N-terminal region forms a helix-turn-helix structure and binds DNA. Binding of tetracycline to TetR reduces the repressor affinity for the tetracycline resistance gene (tetA) promoter operator sites. http://togogenome.org/gene/1313172:YM304_RS03985 ^@ http://purl.uniprot.org/uniprot/A0A6C7DXG5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL1 family.|||Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.|||Part of the 50S ribosomal subunit.|||Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA. http://togogenome.org/gene/1313172:YM304_RS03645 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8W0 ^@ Domain|||Similarity ^@ Belongs to the PurH family.|||The IMP cyclohydrolase activity resides in the N-terminal region. http://togogenome.org/gene/1313172:YM304_RS13550 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEG0 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the methylthiotransferase family. MiaB subfamily.|||Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.|||Cytoplasm|||Monomer. http://togogenome.org/gene/1313172:YM304_RS08990 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDP9 ^@ Similarity ^@ Belongs to the 2-oxoacid dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS17095 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7T5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the serine/threonine dehydratase family.|||Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.|||Homotetramer. http://togogenome.org/gene/1313172:YM304_RS17595 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECU4 ^@ Function|||Similarity ^@ Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.|||Catalyzes the reduction of sulfite to sulfide, a step in the biosynthesis of sulfur-containing amino acids and cofactors. http://togogenome.org/gene/1313172:YM304_RS06425 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAE4 ^@ Similarity ^@ Belongs to the F420H(2)-dependent quinone reductase family. http://togogenome.org/gene/1313172:YM304_RS05515 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8E2 ^@ Similarity ^@ Belongs to the UDPGP type 2 family. http://togogenome.org/gene/1313172:YM304_RS17675 ^@ http://purl.uniprot.org/uniprot/A0A6C7EF84 ^@ Function|||Subunit ^@ Catalyzes the synthesis of GMP from XMP.|||Homodimer. http://togogenome.org/gene/1313172:YM304_RS13755 ^@ http://purl.uniprot.org/uniprot/A0A6C7EGG7 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the IspG family.|||Binds 1 [4Fe-4S] cluster.|||Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. http://togogenome.org/gene/1313172:YM304_RS18705 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBD0 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.|||Cell membrane|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane|||Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane. http://togogenome.org/gene/1313172:YM304_RS10430 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7E0 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS08595 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDE8 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS07555 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5L6 ^@ Similarity ^@ Belongs to the peptidase M24B family. http://togogenome.org/gene/1313172:YM304_RS09005 ^@ http://purl.uniprot.org/uniprot/A0A6C7EA65 ^@ Similarity ^@ Belongs to the type II topoisomerase GyrA/ParC subunit family. http://togogenome.org/gene/1313172:YM304_RS01245 ^@ http://purl.uniprot.org/uniprot/A0A6C7DUM3 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS10285 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8M0 ^@ Similarity ^@ Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. http://togogenome.org/gene/1313172:YM304_RS04660 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3K9 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/1313172:YM304_RS15855 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6Z8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS19045 ^@ http://purl.uniprot.org/uniprot/A0A6C7EJH6 ^@ Subcellular Location Annotation ^@ Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS11330 ^@ http://purl.uniprot.org/uniprot/A0A6C7EF24 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the imidazoleglycerol-phosphate dehydratase family.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS03650 ^@ http://purl.uniprot.org/uniprot/A0A6C7E735 ^@ Similarity ^@ Belongs to the methylenetetrahydrofolate reductase family. http://togogenome.org/gene/1313172:YM304_RS03355 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3Y3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SIMIBI class G3E GTPase family. UreG subfamily.|||Cytoplasm|||Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.|||Homodimer. UreD, UreF and UreG form a complex that acts as a GTP-hydrolysis-dependent molecular chaperone, activating the urease apoprotein by helping to assemble the nickel containing metallocenter of UreC. The UreE protein probably delivers the nickel. http://togogenome.org/gene/1313172:YM304_RS10185 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8K1 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the elongation factor P family.|||Cytoplasm|||Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. http://togogenome.org/gene/1313172:YM304_RS20265 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC67 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS10245 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2W8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the RNA polymerase subunit omega family.|||Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.|||The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription. http://togogenome.org/gene/1313172:YM304_RS09180 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5Q4 ^@ Similarity ^@ Belongs to the folylpolyglutamate synthase family. http://togogenome.org/gene/1313172:YM304_RS05085 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7Z6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS10625 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6P1 ^@ Similarity ^@ Belongs to the citrate synthase family. http://togogenome.org/gene/1313172:YM304_RS05720 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBQ8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS12480 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFQ4 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the 'phage' integrase family. XerC subfamily.|||Belongs to the 'phage' integrase family. XerD subfamily.|||Cytoplasm|||Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.|||Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. http://togogenome.org/gene/1313172:YM304_RS01665 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2F2 ^@ Similarity ^@ Belongs to the glycosyl hydrolase 38 family. http://togogenome.org/gene/1313172:YM304_RS09460 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAQ8 ^@ Caution|||Function|||Similarity ^@ Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Synthesizes alpha-1,4-glucan chains using ADP-glucose. http://togogenome.org/gene/1313172:YM304_RS20000 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9H3 ^@ Similarity ^@ Belongs to the creatininase superfamily. http://togogenome.org/gene/1313172:YM304_RS03115 ^@ http://purl.uniprot.org/uniprot/A0A6C7E231 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS17860 ^@ http://purl.uniprot.org/uniprot/A0A6C7EIS7 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I 49 kDa subunit family.|||Cell membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/1313172:YM304_RS21065 ^@ http://purl.uniprot.org/uniprot/A0A6C7EF07 ^@ Similarity ^@ Belongs to the C/M/P thioester hydrolase family. http://togogenome.org/gene/1313172:YM304_RS19260 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECQ4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the Mrp/NBP35 ATP-binding proteins family.|||Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP.|||Homodimer.|||In the C-terminal section; belongs to the Mrp/NBP35 ATP-binding proteins family.|||In the N-terminal section; belongs to the MIP18 family. http://togogenome.org/gene/1313172:YM304_RS04165 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4L6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL2 family.|||One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.|||Part of the 50S ribosomal subunit. Forms a bridge to the 30S subunit in the 70S ribosome. http://togogenome.org/gene/1313172:YM304_RS02090 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1D4 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I 49 kDa subunit family.|||Cell membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/1313172:YM304_RS09715 ^@ http://purl.uniprot.org/uniprot/A0A6C7EE57 ^@ Caution|||Function|||PTM|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MurCDEF family. MurE subfamily.|||Carboxylation is probably crucial for Mg(2+) binding and, consequently, for the gamma-phosphate positioning of ATP.|||Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/1313172:YM304_RS07615 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6Y9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/1313172:YM304_RS14035 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9H9 ^@ Similarity ^@ Belongs to the FGGY kinase family. http://togogenome.org/gene/1313172:YM304_RS01910 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZZ0 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS10610 ^@ http://purl.uniprot.org/uniprot/A0A6C7E367 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS25410 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8V2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the GtrA family.|||Belongs to the glycosyltransferase 2 family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS12180 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFJ4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TrpA family.|||Tetramer of two alpha and two beta chains.|||The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. http://togogenome.org/gene/1313172:YM304_RS23365 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFB7 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the OXA1/ALB3/YidC family. Type 1 subfamily.|||Interacts with the Sec translocase complex via SecD. Specifically interacts with transmembrane segments of nascent integral membrane proteins during membrane integration.|||Membrane|||Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. http://togogenome.org/gene/1313172:YM304_RS11865 ^@ http://purl.uniprot.org/uniprot/A0A6C7E8K2 ^@ Cofactor|||Function|||Similarity ^@ Binds 1 Mg(2+) ion per subunit.|||Binds 1 [4Fe-4S] cluster per subunit.|||Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.|||In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. http://togogenome.org/gene/1313172:YM304_RS15365 ^@ http://purl.uniprot.org/uniprot/A0A6C7EHC4 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/1313172:YM304_RS09400 ^@ http://purl.uniprot.org/uniprot/A0A6C7E725 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/1313172:YM304_RS10380 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7D4 ^@ Similarity ^@ Belongs to the UPF0301 (AlgH) family. http://togogenome.org/gene/1313172:YM304_RS04405 ^@ http://purl.uniprot.org/uniprot/A0A6C7E361 ^@ Similarity|||Subunit ^@ Belongs to the bacterial ribosomal protein bL17 family.|||Part of the 50S ribosomal subunit. Contacts protein L32. http://togogenome.org/gene/1313172:YM304_RS13260 ^@ http://purl.uniprot.org/uniprot/A0A6C7E918 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS12425 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECD6 ^@ Cofactor|||Similarity ^@ Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.|||Binds 1 FAD per subunit. http://togogenome.org/gene/1313172:YM304_RS21645 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1X2 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS04115 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2X9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS10 family.|||Involved in the binding of tRNA to the ribosomes.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/1313172:YM304_RS21070 ^@ http://purl.uniprot.org/uniprot/A0A6C7EE01 ^@ Similarity ^@ Belongs to the metallo-beta-lactamase superfamily. Class-B beta-lactamase family. http://togogenome.org/gene/1313172:YM304_RS01045 ^@ http://purl.uniprot.org/uniprot/A0A6C7DUE7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS14175 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED80 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ABC-2 integral membrane protein family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS04510 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4V5 ^@ Function|||Similarity ^@ Belongs to the dus family.|||Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. http://togogenome.org/gene/1313172:YM304_RS14925 ^@ http://purl.uniprot.org/uniprot/A0A6C7E993 ^@ Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ArgJ family.|||Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate.|||Cytoplasm|||Heterotetramer of two alpha and two beta chains.|||Some bacteria possess a monofunctional ArgJ, i.e., capable of catalyzing only the fifth step of the arginine biosynthetic pathway. http://togogenome.org/gene/1313172:YM304_RS10855 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7Z4 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the triosephosphate isomerase family.|||Cytoplasm|||Homodimer.|||Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P). http://togogenome.org/gene/1313172:YM304_RS04240 ^@ http://purl.uniprot.org/uniprot/A0A6C7E219 ^@ Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL30 family.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/1313172:YM304_RS00885 ^@ http://purl.uniprot.org/uniprot/A0A6C7E0A2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS15335 ^@ http://purl.uniprot.org/uniprot/A0A6C7EAF8 ^@ Similarity|||Subunit ^@ Belongs to the pyruvate kinase family.|||Homotetramer. http://togogenome.org/gene/1313172:YM304_RS08375 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6D7 ^@ Subunit ^@ Heterodimer of an alpha and a beta chain. http://togogenome.org/gene/1313172:YM304_RS14055 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDB2 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the acireductone dioxygenase (ARD) family.|||Binds 1 Fe(2+) cation per monomer.|||Binds 1 nickel ion per monomer.|||Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4-methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway.|||Monomer. http://togogenome.org/gene/1313172:YM304_RS04110 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2X0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.|||Cytoplasm|||Monomer.|||This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. http://togogenome.org/gene/1313172:YM304_RS14220 ^@ http://purl.uniprot.org/uniprot/A0A6C7EEV5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SecA family.|||Cell membrane|||Cytoplasm|||Monomer and homodimer. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.|||Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. http://togogenome.org/gene/1313172:YM304_RS01050 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5L2 ^@ Similarity ^@ Belongs to the ABC transporter superfamily. http://togogenome.org/gene/1313172:YM304_RS12335 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7R5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS20245 ^@ http://purl.uniprot.org/uniprot/A0A6C7EDF9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS09895 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7E1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the LemA family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS00140 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1B7 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS15375 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFI1 ^@ Similarity ^@ Belongs to the aldehyde dehydrogenase family. http://togogenome.org/gene/1313172:YM304_RS17325 ^@ http://purl.uniprot.org/uniprot/A0A6C7EBK9 ^@ Cofactor|||Similarity ^@ Belongs to the carotenoid oxygenase family.|||Binds 1 Fe(2+) ion per subunit. http://togogenome.org/gene/1313172:YM304_RS08275 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9Z9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the CDP-alcohol phosphatidyltransferase class-I family.|||Membrane http://togogenome.org/gene/1313172:YM304_RS06865 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5C7 ^@ Similarity ^@ Belongs to the CapA family. http://togogenome.org/gene/1313172:YM304_RS12070 ^@ http://purl.uniprot.org/uniprot/A0A6C7E4D2 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.|||Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family.|||Cell membrane|||Cytoplasm|||Monomer. http://togogenome.org/gene/1313172:YM304_RS18190 ^@ http://purl.uniprot.org/uniprot/A0A6C7ED72 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS07930 ^@ http://purl.uniprot.org/uniprot/A0A6C7E9R9 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS19065 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECL9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the CPA3 antiporters (TC 2.A.63) subunit F family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS15425 ^@ http://purl.uniprot.org/uniprot/A0A6C7EFJ5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS04105 ^@ http://purl.uniprot.org/uniprot/A0A6C7E7C8 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.|||Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.|||Cytoplasm http://togogenome.org/gene/1313172:YM304_RS04435 ^@ http://purl.uniprot.org/uniprot/A0A6C7EB02 ^@ Cofactor|||Function|||PTM|||Similarity ^@ Activated by phosphorylation.|||Belongs to the phosphohexose mutase family.|||Binds 1 Mg(2+) ion per subunit.|||Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate. http://togogenome.org/gene/1313172:YM304_RS04080 ^@ http://purl.uniprot.org/uniprot/A0A6C7DXI9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS7 family.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.|||Part of the 30S ribosomal subunit. Contacts proteins S9 and S11. http://togogenome.org/gene/1313172:YM304_RS05430 ^@ http://purl.uniprot.org/uniprot/A0A6C7E2X2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.|||Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.|||Monomer. http://togogenome.org/gene/1313172:YM304_RS06405 ^@ http://purl.uniprot.org/uniprot/A0A6C7DZT5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ABC-2 integral membrane protein family.|||Cell membrane|||Membrane http://togogenome.org/gene/1313172:YM304_RS08565 ^@ http://purl.uniprot.org/uniprot/A0A6C7E6B2 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. Thiolase family. http://togogenome.org/gene/1313172:YM304_RS12395 ^@ http://purl.uniprot.org/uniprot/A0A6C7EC79 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/1313172:YM304_RS08980 ^@ http://purl.uniprot.org/uniprot/A0A6C7E1U1 ^@ Function|||Similarity ^@ Belongs to the BCKDHA family.|||The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). http://togogenome.org/gene/1313172:YM304_RS04370 ^@ http://purl.uniprot.org/uniprot/A0A6C7E3C4 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/1313172:YM304_RS20205 ^@ http://purl.uniprot.org/uniprot/A0A6C7EH91 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the pseudouridine-5'-phosphate glycosidase family.|||Binds 1 Mn(2+) ion per subunit.|||Catalyzes the reversible cleavage of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway.|||Homotrimer. http://togogenome.org/gene/1313172:YM304_RS07570 ^@ http://purl.uniprot.org/uniprot/A0A6C7E5U7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the prokaryotic Ku family.|||Homodimer. Interacts with LigD.|||With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. http://togogenome.org/gene/1313172:YM304_RS17285 ^@ http://purl.uniprot.org/uniprot/A0A6C7ECP0 ^@ Similarity ^@ Belongs to the iron/ascorbate-dependent oxidoreductase family. http://togogenome.org/gene/1313172:YM304_RS19110 ^@ http://purl.uniprot.org/uniprot/A0A6C7EG42 ^@ Function|||Similarity|||Subunit ^@ Belongs to the ClpS family.|||Binds to the N-terminal domain of the chaperone ClpA.|||Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation.