http://togogenome.org/gene/420247:MSM_RS03710 ^@ http://purl.uniprot.org/uniprot/A5UL70 ^@ Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eL19 family.|||Binds to the 23S rRNA.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS07190 ^@ http://purl.uniprot.org/uniprot/A5UN55 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the archaeal Rpo3/eukaryotic RPB3 RNA polymerase subunit family.|||Binds 1 [3Fe-4S] cluster.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex.|||X-ray crystallography in other archaea shows this protein binds a 3Fe-4S cluster, although a 4Fe-4S cluster has been suggested to be present in this protein. http://togogenome.org/gene/420247:MSM_RS06805 ^@ http://purl.uniprot.org/uniprot/A5UMX8 ^@ Similarity ^@ Belongs to the precorrin methyltransferase family. http://togogenome.org/gene/420247:MSM_RS08215 ^@ http://purl.uniprot.org/uniprot/A5UNR6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS04155 ^@ http://purl.uniprot.org/uniprot/A5ULG0 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eS17 family. http://togogenome.org/gene/420247:MSM_RS01425 ^@ http://purl.uniprot.org/uniprot/A5UJW8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/420247:MSM_RS03270 ^@ http://purl.uniprot.org/uniprot/A5UKY0 ^@ Similarity ^@ Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. http://togogenome.org/gene/420247:MSM_RS07755 ^@ http://purl.uniprot.org/uniprot/A5UNH6 ^@ Function|||Subcellular Location Annotation|||Subunit ^@ Cytoplasm|||Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.|||Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL. http://togogenome.org/gene/420247:MSM_RS06080 ^@ http://purl.uniprot.org/uniprot/A5UMI0 ^@ Cofactor|||Similarity ^@ Belongs to the peptidase M48 family.|||Binds 1 zinc ion per subunit. http://togogenome.org/gene/420247:MSM_RS04700 ^@ http://purl.uniprot.org/uniprot/A5ULR0 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CobS family.|||Cell membrane|||Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate.|||Membrane http://togogenome.org/gene/420247:MSM_RS04200 ^@ http://purl.uniprot.org/uniprot/A5ULG9 ^@ Cofactor|||Similarity ^@ Belongs to the ELP3 family.|||Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. http://togogenome.org/gene/420247:MSM_RS02925 ^@ http://purl.uniprot.org/uniprot/A5UKR0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS06925 ^@ http://purl.uniprot.org/uniprot/A5UN01 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.|||Cytoplasm|||Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. http://togogenome.org/gene/420247:MSM_RS03720 ^@ http://purl.uniprot.org/uniprot/A5UL72 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL6 family.|||Part of the 50S ribosomal subunit.|||This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center. http://togogenome.org/gene/420247:MSM_RS03010 ^@ http://purl.uniprot.org/uniprot/A5UKS9 ^@ Function|||Similarity ^@ Belongs to the EF-1-beta/EF-1-delta family.|||Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. http://togogenome.org/gene/420247:MSM_RS05245 ^@ http://purl.uniprot.org/uniprot/A5UM19 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the autoinducer-2 exporter (AI-2E) (TC 2.A.86) family.|||Membrane http://togogenome.org/gene/420247:MSM_RS00915 ^@ http://purl.uniprot.org/uniprot/A5UJL5 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the rubredoxin family.|||Binds 1 Fe(3+) ion per subunit.|||Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule. http://togogenome.org/gene/420247:MSM_RS08540 ^@ http://purl.uniprot.org/uniprot/A5UNY4 ^@ Similarity ^@ Belongs to the NifH/BchL/ChlL family. http://togogenome.org/gene/420247:MSM_RS00955 ^@ http://purl.uniprot.org/uniprot/A5UJM3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the archaeal Spt4 family.|||Heterodimer composed of Spt4 and Spt5.|||Stimulates transcription elongation. http://togogenome.org/gene/420247:MSM_RS03770 ^@ http://purl.uniprot.org/uniprot/A5UL82 ^@ Similarity ^@ Belongs to the universal ribosomal protein uL29 family. http://togogenome.org/gene/420247:MSM_RS06485 ^@ http://purl.uniprot.org/uniprot/A5UMR1 ^@ Cofactor ^@ Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. http://togogenome.org/gene/420247:MSM_RS06470 ^@ http://purl.uniprot.org/uniprot/A5UMQ8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the CbiX family. CbiXS subfamily.|||Catalyzes the insertion of Co(2+) into sirohydrochlorin as part of the anaerobic pathway to cobalamin biosynthesis. Involved in the biosynthesis of the unique nickel-containing tetrapyrrole coenzyme F430, the prosthetic group of methyl-coenzyme M reductase (MCR), which plays a key role in methanogenesis and anaerobic methane oxidation. Catalyzes the insertion of Ni(2+) into sirohydrochlorin to yield Ni-sirohydrochlorin.|||Homotetramer; dimer of dimers. http://togogenome.org/gene/420247:MSM_RS06560 ^@ http://purl.uniprot.org/uniprot/A5UMS6 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the LeuD family. LeuD type 2 subfamily.|||Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.|||Heterodimer of LeuC and LeuD.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS06940 ^@ http://purl.uniprot.org/uniprot/A5UN04 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL21 family. http://togogenome.org/gene/420247:MSM_RS06910 ^@ http://purl.uniprot.org/uniprot/A5UMZ8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the Orn/Lys/Arg decarboxylase class-II family. LysA subfamily.|||Homodimer.|||Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine. http://togogenome.org/gene/420247:MSM_RS00590 ^@ http://purl.uniprot.org/uniprot/A5UJE8 ^@ Activity Regulation|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the MRE11/RAD32 family.|||Binds 2 manganese ions per subunit.|||Homodimer. Forms a heterotetramer composed of two Mre11 subunits and two Rad50 subunits.|||Nuclease activity is regulated by Rad50.|||Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. http://togogenome.org/gene/420247:MSM_RS07460 ^@ http://purl.uniprot.org/uniprot/A5UNB1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS03920 ^@ http://purl.uniprot.org/uniprot/A5ULB3 ^@ Similarity ^@ Belongs to the intimin/invasin family. http://togogenome.org/gene/420247:MSM_RS01070 ^@ http://purl.uniprot.org/uniprot/A5UJP7 ^@ Similarity ^@ Belongs to the TCP-1 chaperonin family. http://togogenome.org/gene/420247:MSM_RS01135 ^@ http://purl.uniprot.org/uniprot/A5UJR1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ammonia transporter channel (TC 1.A.11.2) family.|||Cell membrane|||Membrane http://togogenome.org/gene/420247:MSM_RS04540 ^@ http://purl.uniprot.org/uniprot/A5ULN3 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the NusA family.|||Cytoplasm|||Participates in transcription termination. http://togogenome.org/gene/420247:MSM_RS03310 ^@ http://purl.uniprot.org/uniprot/A5UKY8 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eS1 family. http://togogenome.org/gene/420247:MSM_RS06360 ^@ http://purl.uniprot.org/uniprot/A5UMN6 ^@ Cofactor|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.|||Binds 1 zinc ion per subunit.|||Catalyzes the deamination of three SAM-derived enzymatic products, namely 5'-deoxyadenosine, S-adenosyl-L-homocysteine, and 5'-methylthioadenosine, to produce the inosine analogs. Can also deaminate adenosine. The preferred substrate for this enzyme is 5'-deoxyadenosine, but all these substrates are efficiently deaminated. Likely functions in a S-adenosyl-L-methionine (SAM) recycling pathway from S-adenosyl-L-homocysteine (SAH) produced from SAM-dependent methylation reactions. May also be involved in the recycling of 5'-deoxyadenosine, whereupon the 5'-deoxyribose moiety of 5'-deoxyinosine is further metabolized to deoxyhexoses used for the biosynthesis of aromatic amino acids in methanogens.|||Homotetramer.|||SAH is a product of SAM methyltransferases and is known to be a feedback inhibitor of these enzymes. As a result of this inhibition, organisms have evolved efficient enzymes to metabolize SAH via different pathways. The pathway found in methanogens differs from the canonical pathway, it uses the deamination of S-adenosyl-L-homocysteine to form S-inosyl-L-homocysteine for the regeneration of SAM from S-adenosyl-L-homocysteine. 5'-deoxyadenosine is a radical SAM enzyme reaction product which strongly inhibits radical SAM enzymes. A pathway for removing this product must be present in methanogens where the MTA/SAH nucleosidase which normally metabolizes this compound is absent. http://togogenome.org/gene/420247:MSM_RS03705 ^@ http://purl.uniprot.org/uniprot/A5UL69 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL18 family.|||Part of the 50S ribosomal subunit. Contacts the 5S and 23S rRNAs.|||This is one of the proteins that bind and probably mediate the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. http://togogenome.org/gene/420247:MSM_RS05270 ^@ http://purl.uniprot.org/uniprot/A5UM24 ^@ Function|||Similarity|||Subunit ^@ Belongs to the methyltransferase superfamily. Fibrillarin family.|||Interacts with nop5. Component of box C/D small ribonucleoprotein (sRNP) particles that contain rpl7ae, FlpA and nop5, plus a guide RNA.|||Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. http://togogenome.org/gene/420247:MSM_RS03685 ^@ http://purl.uniprot.org/uniprot/A5UL65 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SecY/SEC61-alpha family.|||Cell membrane|||Component of the Sec protein translocase complex. Heterotrimer consisting of alpha (SecY), beta (SecG) and gamma (SecE) subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. May interact with SecDF, and other proteins may be involved.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane|||The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. http://togogenome.org/gene/420247:MSM_RS04150 ^@ http://purl.uniprot.org/uniprot/A5ULF9 ^@ Similarity ^@ Belongs to the aspartokinase family. http://togogenome.org/gene/420247:MSM_RS06850 ^@ http://purl.uniprot.org/uniprot/A5UMY6 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the purine/pyrimidine phosphoribosyltransferase family. Archaeal HPRT subfamily.|||Catalyzes a salvage reaction resulting in the formation of IMP that is energically less costly than de novo synthesis.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/420247:MSM_RS07795 ^@ http://purl.uniprot.org/uniprot/A5UNI4 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the archaeosine tRNA-ribosyltransferase family.|||Binds 1 zinc ion per subunit.|||Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs. http://togogenome.org/gene/420247:MSM_RS01900 ^@ http://purl.uniprot.org/uniprot/A5UK61 ^@ Function|||Similarity|||Subunit ^@ Belongs to the NAC-alpha family.|||Contacts the emerging nascent chain on the ribosome.|||Homodimer. Interacts with the ribosome. Binds ribosomal RNA. http://togogenome.org/gene/420247:MSM_RS00365 ^@ http://purl.uniprot.org/uniprot/A5UJA4 ^@ Similarity ^@ Belongs to the thymidylate kinase family. http://togogenome.org/gene/420247:MSM_RS06900 ^@ http://purl.uniprot.org/uniprot/A5UMZ6 ^@ Similarity ^@ Belongs to the Nudix hydrolase family. http://togogenome.org/gene/420247:MSM_RS06760 ^@ http://purl.uniprot.org/uniprot/A5UMW7 ^@ Function|||Similarity ^@ Belongs to the AdoMet synthase 2 family.|||Catalyzes the formation of S-adenosylmethionine from methionine and ATP. http://togogenome.org/gene/420247:MSM_RS05725 ^@ http://purl.uniprot.org/uniprot/A5UMA9 ^@ Function|||Similarity ^@ Belongs to the NOP10 family.|||Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. http://togogenome.org/gene/420247:MSM_RS00150 ^@ http://purl.uniprot.org/uniprot/A5UJ60 ^@ Function|||Similarity ^@ Belongs to the ketopantoate reductase family.|||Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. http://togogenome.org/gene/420247:MSM_RS06040 ^@ http://purl.uniprot.org/uniprot/A5UMH2 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the HAM1 NTPase family.|||Binds 1 Mg(2+) ion per subunit.|||Homodimer.|||Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. http://togogenome.org/gene/420247:MSM_RS04505 ^@ http://purl.uniprot.org/uniprot/A5ULM6 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.|||Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS01785 ^@ http://purl.uniprot.org/uniprot/A5UK38 ^@ Cofactor|||Domain|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Belongs to the small carbamoyl-phosphate synthase family.|||Binds 2 magnesium or manganese ions per subunit.|||Catalyzes the synthesis of carbamoyl phosphate from ATP, ammonium and bicarbonate. Proceeds via a three-step mechanism, i.e. the phosphorylation of hydrogencarbonate to carboxyphosphate, a nucleophilic attack of ammonia on carboxyphosphate yielding carbamate, and the phosphorylation of carbamate forming carbamoyl phosphate. In M.smithii, the predominant archaeon in the human gut, one function of this enzyme may be to sequester ammonia, a scarce nutrient in the intestine which is the major source of nitrogen in M.smithii for the biosynthesis of nucleotides, amino acids, and many other metabolites.|||Forms homodimers and homotetramers (dimers of dimers).|||Lacks the domain involved in allosteric regulation present in CarB CPSases.|||Several lines of evidence suggest that obesity is associated with elevated levels of intestinal methanogenic archaea. Consequently, this enzyme may be an attractive drug target in the treatment of human obesity. http://togogenome.org/gene/420247:MSM_RS06700 ^@ http://purl.uniprot.org/uniprot/A5UMV4 ^@ Similarity ^@ Belongs to the CDP-glycerol glycerophosphotransferase family. http://togogenome.org/gene/420247:MSM_RS02410 ^@ http://purl.uniprot.org/uniprot/A5UKG5 ^@ Cofactor|||Similarity|||Subunit ^@ Belongs to the CarB family.|||Binds 4 Mg(2+) or Mn(2+) ions per subunit.|||Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate. http://togogenome.org/gene/420247:MSM_RS05080 ^@ http://purl.uniprot.org/uniprot/A5ULY6 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the MtrF family.|||Cell membrane|||Part of a complex that catalyzes the formation of methyl-coenzyme M and tetrahydromethanopterin from coenzyme M and methyl-tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.|||The complex is composed of 8 subunits; MtrA, MtrB, MtrC, MtrD, MtrE, MtrF, MtrG and MtrH. http://togogenome.org/gene/420247:MSM_RS01130 ^@ http://purl.uniprot.org/uniprot/A5UJR0 ^@ Function|||Similarity ^@ Belongs to the P(II) protein family.|||Could be involved in the regulation of nitrogen fixation. http://togogenome.org/gene/420247:MSM_RS00610 ^@ http://purl.uniprot.org/uniprot/A5UJF2 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL40 family. http://togogenome.org/gene/420247:MSM_RS06980 ^@ http://purl.uniprot.org/uniprot/A5UN14 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS05110 ^@ http://purl.uniprot.org/uniprot/A5ULZ2 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the methyl-coenzyme M reductase alpha subunit family.|||Binds 2 coenzyme F430 non-covalently per MCR complex. Coenzyme F430 is a yellow nickel porphinoid. Methyl-coenzyme-M reductase is activated when the enzyme-bound coenzyme F430 is reduced to the Ni(I) oxidation state.|||Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2-(methylthio)ethanesulfonate) using coenzyme B (CoB or 7-mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.|||Hexamer of two alpha, two beta, and two gamma chains.|||MCR is a hexamer of two alpha, two beta, and two gamma chains, forming a dimer of heterotrimers. http://togogenome.org/gene/420247:MSM_RS02110 ^@ http://purl.uniprot.org/uniprot/A5UKA4 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the archaeal DnaG primase family.|||Binds two Mg(2+) per subunit.|||Forms a ternary complex with MCM helicase and DNA. Component of the archaeal exosome complex.|||RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteromeric, adenine-rich transcripts and the exosome. http://togogenome.org/gene/420247:MSM_RS06275 ^@ http://purl.uniprot.org/uniprot/A5UML9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TrpB family.|||Tetramer of two alpha and two beta chains.|||The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine. http://togogenome.org/gene/420247:MSM_RS08045 ^@ http://purl.uniprot.org/uniprot/A5UNN1 ^@ Similarity ^@ Belongs to the UDPGP type 2 family. http://togogenome.org/gene/420247:MSM_RS03280 ^@ http://purl.uniprot.org/uniprot/A5UKY2 ^@ Similarity ^@ In the C-terminal section; belongs to the transferase hexapeptide repeat family.|||In the N-terminal section; belongs to the N-acetylglucosamine-1-phosphate uridyltransferase family. http://togogenome.org/gene/420247:MSM_RS04930 ^@ http://purl.uniprot.org/uniprot/A5ULV6 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the RNase HII family.|||Cytoplasm|||Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.|||Manganese or magnesium. Binds 1 divalent metal ion per monomer in the absence of substrate. May bind a second metal ion after substrate binding. http://togogenome.org/gene/420247:MSM_RS00605 ^@ http://purl.uniprot.org/uniprot/A5UJF1 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the GGGP/HepGP synthase family. Group II subfamily.|||Cytoplasm|||Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. http://togogenome.org/gene/420247:MSM_RS06175 ^@ http://purl.uniprot.org/uniprot/A5UMJ9 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the ketol-acid reductoisomerase family.|||Binds 2 magnesium ions per subunit.|||Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. http://togogenome.org/gene/420247:MSM_RS05200 ^@ http://purl.uniprot.org/uniprot/A5UM10 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the GTP cyclohydrolase IV family.|||Binds 1 Fe(2+) ion per subunit.|||Converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS01150 ^@ http://purl.uniprot.org/uniprot/A5UJR4 ^@ Caution|||Function|||Similarity ^@ Belongs to the UbiX/PAD1 family.|||Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS00980 ^@ http://purl.uniprot.org/uniprot/A5UJM8 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eS6 family. http://togogenome.org/gene/420247:MSM_RS02830 ^@ http://purl.uniprot.org/uniprot/A5UKP3 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.|||Cell membrane|||Membrane http://togogenome.org/gene/420247:MSM_RS03735 ^@ http://purl.uniprot.org/uniprot/A5UL75 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL5 family.|||Part of the 50S ribosomal subunit; contacts the 5S rRNA and probably tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.|||This is one of the proteins that bind and probably mediate the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. http://togogenome.org/gene/420247:MSM_RS05240 ^@ http://purl.uniprot.org/uniprot/A5UM18 ^@ Similarity ^@ Belongs to the DNA polymerase type-B family. http://togogenome.org/gene/420247:MSM_RS03575 ^@ http://purl.uniprot.org/uniprot/A5UL43 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the STT3 family.|||Membrane http://togogenome.org/gene/420247:MSM_RS06500 ^@ http://purl.uniprot.org/uniprot/A5UMR4 ^@ Function|||Similarity ^@ Belongs to the AIR carboxylase family. Class I subfamily.|||Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR). http://togogenome.org/gene/420247:MSM_RS03805 ^@ http://purl.uniprot.org/uniprot/A5UL89 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL3 family.|||One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.|||Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L24e. http://togogenome.org/gene/420247:MSM_RS06035 ^@ http://purl.uniprot.org/uniprot/A5UMH1 ^@ Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS15 family.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS03520 ^@ http://purl.uniprot.org/uniprot/A5UL31 ^@ Function|||Similarity ^@ Belongs to the eIF-6 family.|||Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. http://togogenome.org/gene/420247:MSM_RS07320 ^@ http://purl.uniprot.org/uniprot/A5UN82 ^@ Function|||Similarity|||Subunit ^@ Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily.|||Homodimer.|||Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate. http://togogenome.org/gene/420247:MSM_RS03120 ^@ http://purl.uniprot.org/uniprot/A5UKV1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the SPT5 family.|||Belongs to the archaeal Spt5 family.|||Heterodimer composed of Spt4 and Spt5. Interacts with RNA polymerase (RNAP).|||Stimulates transcription elongation. http://togogenome.org/gene/420247:MSM_RS08165 ^@ http://purl.uniprot.org/uniprot/A5UNQ6 ^@ Activity Regulation|||Caution|||Function|||Similarity|||Subunit ^@ Belongs to the IMPDH/GMPR family.|||Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Mycophenolic acid (MPA) is a non-competitive inhibitor that prevents formation of the closed enzyme conformation by binding to the same site as the amobile flap. In contrast, mizoribine monophosphate (MZP) is a competitive inhibitor that induces the closed conformation. MPA is a potent inhibitor of mammalian IMPDHs but a poor inhibitor of the bacterial enzymes. MZP is a more potent inhibitor of bacterial IMPDH. http://togogenome.org/gene/420247:MSM_RS02980 ^@ http://purl.uniprot.org/uniprot/A5UKS3 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS06170 ^@ http://purl.uniprot.org/uniprot/A5UMJ8 ^@ Similarity ^@ Belongs to the UPF0285 family. http://togogenome.org/gene/420247:MSM_RS06145 ^@ http://purl.uniprot.org/uniprot/A5UMJ2 ^@ Domain|||Function|||Miscellaneous|||Similarity ^@ Belongs to the CobB/CbiA family.|||Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source. Involved in the biosynthesis of the unique nickel-containing tetrapyrrole coenzyme F430, the prosthetic group of methyl-coenzyme M reductase (MCR), which plays a key role in methanogenesis and anaerobic methane oxidation. Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of Ni-sirohydrochlorin, using L-glutamine or ammonia as the nitrogen source.|||Comprises of two domains. The C-terminal domain contains the binding site for glutamine and catalyzes the hydrolysis of this substrate to glutamate and ammonia. The N-terminal domain is anticipated to bind ATP, and cobyrinate or Ni-sirohydrochlorin, and catalyzes the ultimate synthesis of the diamide product. The ammonia produced via the glutaminase domain is probably translocated to the adjacent domain via a molecular tunnel, where it reacts with an activated intermediate.|||The a and c carboxylates of cobyrinate and Ni-sirohydrochlorin are activated for nucleophilic attack via formation of a phosphorylated intermediate by ATP. CbiA catalyzes first the amidation of the c-carboxylate, and then that of the a-carboxylate. http://togogenome.org/gene/420247:MSM_RS07715 ^@ http://purl.uniprot.org/uniprot/A5UNG7 ^@ Similarity ^@ Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. http://togogenome.org/gene/420247:MSM_RS06065 ^@ http://purl.uniprot.org/uniprot/A5UMH7 ^@ Similarity ^@ Belongs to the UPF0284 family. http://togogenome.org/gene/420247:MSM_RS07195 ^@ http://purl.uniprot.org/uniprot/A5UN56 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL18 family. http://togogenome.org/gene/420247:MSM_RS01175 ^@ http://purl.uniprot.org/uniprot/A5UJR9 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RNase PH family. Rrp41 subfamily.|||Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'->5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails.|||Component of the archaeal exosome complex. Forms a hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 heterodimers. The hexameric ring associates with a trimer of Rrp4 and/or Csl4 subunits.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS06935 ^@ http://purl.uniprot.org/uniprot/A5UN03 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic RPB4 RNA polymerase subunit family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. This subunit is less well bound than the others.|||Part of the RNA polymerase complex. Forms a stalk with Rpo7 that extends from the main structure. http://togogenome.org/gene/420247:MSM_RS01180 ^@ http://purl.uniprot.org/uniprot/A5UJS0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RRP4 family.|||Component of the archaeal exosome complex. Forms a trimer of Rrp4 and/or Csl4 subunits. The trimer associates with a hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 heterodimers.|||Cytoplasm|||Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. http://togogenome.org/gene/420247:MSM_RS04135 ^@ http://purl.uniprot.org/uniprot/A5ULF6 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the aspartate-semialdehyde dehydrogenase family.|||Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS01010 ^@ http://purl.uniprot.org/uniprot/A5UJN4 ^@ Similarity ^@ Belongs to the UPF0251 family. http://togogenome.org/gene/420247:MSM_RS05755 ^@ http://purl.uniprot.org/uniprot/A5UMB5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the CobB/CobQ family. GatD subfamily.|||Forms a heterodimer with MurT.|||The lipid II isoglutaminyl synthase complex catalyzes the formation of alpha-D-isoglutamine in the cell wall lipid II stem peptide. The GatD subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia. The resulting ammonia molecule is channeled to the active site of MurT. http://togogenome.org/gene/420247:MSM_RS04165 ^@ http://purl.uniprot.org/uniprot/A5ULG2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the GHMP kinase family. Archaeal shikimate kinase subfamily.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS03165 ^@ http://purl.uniprot.org/uniprot/A5UKW0 ^@ Similarity ^@ Belongs to the archaeosine synthase type 1 family. http://togogenome.org/gene/420247:MSM_RS01820 ^@ http://purl.uniprot.org/uniprot/A5UK45 ^@ Similarity ^@ Belongs to the glutamate synthase family. http://togogenome.org/gene/420247:MSM_RS03860 ^@ http://purl.uniprot.org/uniprot/A5ULA0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS01705 ^@ http://purl.uniprot.org/uniprot/A5UK24 ^@ Similarity ^@ Belongs to the DegT/DnrJ/EryC1 family. http://togogenome.org/gene/420247:MSM_RS04915 ^@ http://purl.uniprot.org/uniprot/A5ULV3 ^@ Function|||Similarity ^@ Belongs to the archaeal IMP cyclohydrolase family.|||Catalyzes the cyclization of 5-formylamidoimidazole-4-carboxamide ribonucleotide to IMP. http://togogenome.org/gene/420247:MSM_RS07215 ^@ http://purl.uniprot.org/uniprot/A5UN60 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunit family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/420247:MSM_RS01845 ^@ http://purl.uniprot.org/uniprot/A5UK50 ^@ Similarity ^@ Belongs to the isocitrate and isopropylmalate dehydrogenases family. http://togogenome.org/gene/420247:MSM_RS03290 ^@ http://purl.uniprot.org/uniprot/A5UKY4 ^@ Function|||Similarity ^@ Belongs to the BPG-independent phosphoglycerate mutase family. A-PGAM subfamily.|||Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate. http://togogenome.org/gene/420247:MSM_RS00895 ^@ http://purl.uniprot.org/uniprot/A5UJL1 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the creatininase superfamily. FAPy deformylase family.|||Catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy).|||Homodimer.|||Requires an additional second metal ion that could be Fe(2+) or Zn(2+).|||Requires one Fe(2+) ion for activity. http://togogenome.org/gene/420247:MSM_RS06580 ^@ http://purl.uniprot.org/uniprot/A5UMT0 ^@ Similarity|||Subunit ^@ Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.|||Homotetramer; probably dimer of dimers. http://togogenome.org/gene/420247:MSM_RS05665 ^@ http://purl.uniprot.org/uniprot/A5UM99 ^@ Similarity ^@ Belongs to the FrhG family. http://togogenome.org/gene/420247:MSM_RS02890 ^@ http://purl.uniprot.org/uniprot/A5UKQ5 ^@ Similarity ^@ Belongs to the UPF0254 family. http://togogenome.org/gene/420247:MSM_RS00255 ^@ http://purl.uniprot.org/uniprot/A5UJ81 ^@ Function|||Similarity ^@ Belongs to the 2H phosphoesterase superfamily. ThpR family.|||Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'-phosphomonoester. http://togogenome.org/gene/420247:MSM_RS00250 ^@ http://purl.uniprot.org/uniprot/A5UJ80 ^@ Function|||Miscellaneous|||Similarity|||Subunit ^@ A single active site specifically recognizes both ATP and CTP and is responsible for their addition.|||Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Archaeal CCA-adding enzyme subfamily.|||Catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. tRNA 3'-terminal CCA addition is required both for tRNA processing and repair. Also involved in tRNA surveillance by mediating tandem CCA addition to generate a CCACCA at the 3' terminus of unstable tRNAs. While stable tRNAs receive only 3'-terminal CCA, unstable tRNAs are marked with CCACCA and rapidly degraded.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS01460 ^@ http://purl.uniprot.org/uniprot/A5UJX5 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL15 family. http://togogenome.org/gene/420247:MSM_RS03700 ^@ http://purl.uniprot.org/uniprot/A5UL68 ^@ Domain|||Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS5 family.|||Part of the 30S ribosomal subunit. Contacts protein S4.|||The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.|||With S4 and S12 plays an important role in translational accuracy. http://togogenome.org/gene/420247:MSM_RS01105 ^@ http://purl.uniprot.org/uniprot/A5UJQ5 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the succinate/malate CoA ligase alpha subunit family.|||Heterotetramer of two alpha and two beta subunits.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. http://togogenome.org/gene/420247:MSM_RS00140 ^@ http://purl.uniprot.org/uniprot/A5UJ57 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MntP (TC 9.B.29) family.|||Cell membrane|||Probably functions as a manganese efflux pump. http://togogenome.org/gene/420247:MSM_RS02535 ^@ http://purl.uniprot.org/uniprot/A5UKJ0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 3 subfamily.|||Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).|||Cytoplasm|||Homodimer. http://togogenome.org/gene/420247:MSM_RS06770 ^@ http://purl.uniprot.org/uniprot/A5UMW9 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the FGAMS family.|||Cytoplasm|||Monomer. Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.|||Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL. http://togogenome.org/gene/420247:MSM_RS04645 ^@ http://purl.uniprot.org/uniprot/A5ULP9 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the TYW1 family.|||Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Component of the wyosine derivatives biosynthesis pathway that catalyzes the condensation of N-methylguanine with 2 carbon atoms from pyruvate to form the tricyclic 4-demethylwyosine (imG-14) on guanosine-37 of tRNA(Phe).|||Cytoplasm|||Monomer. http://togogenome.org/gene/420247:MSM_RS05990 ^@ http://purl.uniprot.org/uniprot/A5UMG2 ^@ Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MGMT family.|||Cytoplasm|||Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.|||This enzyme catalyzes only one turnover and therefore is not strictly catalytic. According to one definition, an enzyme is a biocatalyst that acts repeatedly and over many reaction cycles. http://togogenome.org/gene/420247:MSM_RS02155 ^@ http://purl.uniprot.org/uniprot/A5UKB3 ^@ Function|||Similarity ^@ Belongs to the V-ATPase F subunit family.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. http://togogenome.org/gene/420247:MSM_RS03580 ^@ http://purl.uniprot.org/uniprot/A5UL44 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the type IA topoisomerase family.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer.|||Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone. http://togogenome.org/gene/420247:MSM_RS05230 ^@ http://purl.uniprot.org/uniprot/A5UM16 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the AIR synthase family.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS05505 ^@ http://purl.uniprot.org/uniprot/A5UM73 ^@ Function ^@ Part of a potassium transport system. http://togogenome.org/gene/420247:MSM_RS04455 ^@ http://purl.uniprot.org/uniprot/A5ULL8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic release factor 1 family.|||Cytoplasm|||Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.|||Heterodimer of two subunits, one of which binds GTP. http://togogenome.org/gene/420247:MSM_RS02940 ^@ http://purl.uniprot.org/uniprot/A5UKR3 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the ABC transporter superfamily.|||Cell membrane|||Part of an ABC transporter complex. Responsible for energy coupling to the transport system.|||Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system. http://togogenome.org/gene/420247:MSM_RS04565 ^@ http://purl.uniprot.org/uniprot/A5ULN8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RNA polymerase beta chain family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The Rpo2 subunit (Rpo2N and Rpo2C in this organism) is implicated in DNA promoter recognition and in nucleotide binding.|||Part of the RNA polymerase complex. http://togogenome.org/gene/420247:MSM_RS01200 ^@ http://purl.uniprot.org/uniprot/A5UJS4 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic/archaeal RNase P protein component 3 family.|||Consists of a catalytic RNA component and at least 4-5 protein subunits.|||Cytoplasm|||Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. http://togogenome.org/gene/420247:MSM_RS06185 ^@ http://purl.uniprot.org/uniprot/A5UMK1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the acetolactate synthase small subunit family.|||Catalyzes the conversion of 2 pyruvate molecules into acetolactate in the first common step of the biosynthetic pathway of the branched-amino acids such as leucine, isoleucine, and valine.|||Dimer of large and small chains. http://togogenome.org/gene/420247:MSM_RS04990 ^@ http://purl.uniprot.org/uniprot/A5ULW8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane|||In the C-terminal section; belongs to the OsmX family.|||In the N-terminal section; belongs to the binding-protein-dependent transport system permease family. http://togogenome.org/gene/420247:MSM_RS08770 ^@ http://purl.uniprot.org/uniprot/A5UP31 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS05780 ^@ http://purl.uniprot.org/uniprot/A5UMC0 ^@ Similarity ^@ Belongs to the TrpC family. http://togogenome.org/gene/420247:MSM_RS04275 ^@ http://purl.uniprot.org/uniprot/A5ULI2 ^@ Function|||Similarity ^@ Belongs to the tRNA pseudouridine synthase TruA family.|||Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. http://togogenome.org/gene/420247:MSM_RS03365 ^@ http://purl.uniprot.org/uniprot/A5UKZ8 ^@ Function|||Similarity ^@ Belongs to the CDC6/cdc18 family.|||Involved in regulation of DNA replication. http://togogenome.org/gene/420247:MSM_RS06380 ^@ http://purl.uniprot.org/uniprot/A5UMP0 ^@ Similarity|||Subunit ^@ Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.|||Heterooligomer of catalytic and regulatory chains. http://togogenome.org/gene/420247:MSM_RS05495 ^@ http://purl.uniprot.org/uniprot/A5UM71 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the UPF0104 family.|||Membrane http://togogenome.org/gene/420247:MSM_RS00945 ^@ http://purl.uniprot.org/uniprot/A5UJM1 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eS24 family. http://togogenome.org/gene/420247:MSM_RS06075 ^@ http://purl.uniprot.org/uniprot/A5UMH9 ^@ Function|||Similarity ^@ Acts on leucine, isoleucine and valine.|||Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/420247:MSM_RS05345 ^@ http://purl.uniprot.org/uniprot/A5UM39 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS00595 ^@ http://purl.uniprot.org/uniprot/A5UJE9 ^@ Similarity ^@ Belongs to the HerA family. http://togogenome.org/gene/420247:MSM_RS05975 ^@ http://purl.uniprot.org/uniprot/A5UMF9 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PRA-CH family.|||Binds 1 Mg(2+) ion per subunit.|||Binds 1 zinc ion per subunit.|||Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/420247:MSM_RS00655 ^@ http://purl.uniprot.org/uniprot/A5UJG1 ^@ Cofactor|||Similarity ^@ Belongs to the peptidase M42 family.|||Binds 2 divalent metal cations per subunit. http://togogenome.org/gene/420247:MSM_RS07505 ^@ http://purl.uniprot.org/uniprot/A5UNC0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS04240 ^@ http://purl.uniprot.org/uniprot/A5ULH5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the beta-RFA-P synthase family.|||Catalyzes the condensation of 4-aminobenzoate (pABA) with 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to produce beta-ribofuranosylaminobenzene 5'-phosphate (beta-RFA-P).|||Homodimer. http://togogenome.org/gene/420247:MSM_RS08180 ^@ http://purl.uniprot.org/uniprot/A5UNQ9 ^@ Function ^@ Probably involved in the biogenesis of the ribosome. http://togogenome.org/gene/420247:MSM_RS03850 ^@ http://purl.uniprot.org/uniprot/A5UL98 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS04310 ^@ http://purl.uniprot.org/uniprot/A5ULI9 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the PyrI family.|||Binds 1 zinc ion per subunit.|||Contains catalytic and regulatory chains.|||Involved in allosteric regulation of aspartate carbamoyltransferase. http://togogenome.org/gene/420247:MSM_RS02815 ^@ http://purl.uniprot.org/uniprot/A5UKP0 ^@ Similarity ^@ Belongs to the class-I fumarase family. http://togogenome.org/gene/420247:MSM_RS06695 ^@ http://purl.uniprot.org/uniprot/A5UMV3 ^@ Similarity ^@ Belongs to the ABC transporter superfamily. http://togogenome.org/gene/420247:MSM_RS06290 ^@ http://purl.uniprot.org/uniprot/A5UMM2 ^@ Function|||PTM|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Acetylated. Deacetylation by the SIR2-homolog deacetylase may regulate its activity.|||Belongs to the histone-like Alba family.|||Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes.|||Chromosome|||Cytoplasm|||Homotetramer. http://togogenome.org/gene/420247:MSM_RS01395 ^@ http://purl.uniprot.org/uniprot/A5UJW2 ^@ Similarity ^@ Belongs to the UPF0179 family. http://togogenome.org/gene/420247:MSM_RS03890 ^@ http://purl.uniprot.org/uniprot/A5ULA6 ^@ Similarity ^@ Belongs to the UPF0173 family. http://togogenome.org/gene/420247:MSM_RS06395 ^@ http://purl.uniprot.org/uniprot/A5UMP3 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CobD/CbiB family.|||Cell membrane|||Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane http://togogenome.org/gene/420247:MSM_RS01185 ^@ http://purl.uniprot.org/uniprot/A5UJS1 ^@ Similarity ^@ Belongs to the SDO1/SBDS family. http://togogenome.org/gene/420247:MSM_RS07005 ^@ http://purl.uniprot.org/uniprot/A5UN19 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the FdhD family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Required for formate dehydrogenase (FDH) activity. http://togogenome.org/gene/420247:MSM_RS07750 ^@ http://purl.uniprot.org/uniprot/A5UNH5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PurS family.|||Cytoplasm|||Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.|||Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL. http://togogenome.org/gene/420247:MSM_RS04630 ^@ http://purl.uniprot.org/uniprot/A5ULP6 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the triosephosphate isomerase family.|||Cytoplasm|||Homotetramer; dimer of dimers.|||Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P). http://togogenome.org/gene/420247:MSM_RS04535 ^@ http://purl.uniprot.org/uniprot/A5ULN2 ^@ Similarity|||Subunit ^@ Belongs to the methyl-coenzyme M reductase beta subunit family.|||Hexamer of two alpha, two beta, and two gamma chains.|||MCR is a hexamer of two alpha, two beta, and two gamma chains, forming a dimer of heterotrimers. http://togogenome.org/gene/420247:MSM_RS02055 ^@ http://purl.uniprot.org/uniprot/A5UK92 ^@ Activity Regulation|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the UMP kinase family.|||Catalyzes the reversible phosphorylation of UMP to UDP.|||Cytoplasm|||Homohexamer.|||Inhibited by UTP. http://togogenome.org/gene/420247:MSM_RS01405 ^@ http://purl.uniprot.org/uniprot/A5UJW4 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 3 subfamily.|||Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).|||Consists of three domains: the N-terminal catalytic domain, the anticodon-binding domain and the C-terminal extension.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/420247:MSM_RS08200 ^@ http://purl.uniprot.org/uniprot/A5UNR3 ^@ Similarity ^@ Belongs to the HisA/HisF family. http://togogenome.org/gene/420247:MSM_RS02415 ^@ http://purl.uniprot.org/uniprot/A5UKG6 ^@ Similarity|||Subunit ^@ Belongs to the CarA family.|||Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate. http://togogenome.org/gene/420247:MSM_RS02590 ^@ http://purl.uniprot.org/uniprot/A5UKK1 ^@ Function|||Similarity ^@ Belongs to the DNA mismatch repair MutS family. Archaeal Muts2 subfamily.|||Has ATPase and non-specific DNA-binding activities. http://togogenome.org/gene/420247:MSM_RS07765 ^@ http://purl.uniprot.org/uniprot/A5UNH8 ^@ Function|||Subcellular Location Annotation|||Subunit ^@ Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/420247:MSM_RS03615 ^@ http://purl.uniprot.org/uniprot/A5UL52 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the XPG/RAD2 endonuclease family. FEN1 subfamily.|||Binds 2 magnesium ions per subunit. They probably participate in the reaction catalyzed by the enzyme. May bind an additional third magnesium ion after substrate binding.|||Interacts with PCNA. PCNA stimulates the nuclease activity without altering cleavage specificity.|||Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as a genome stabilization factor that prevents flaps from equilibrating into structures that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA (By similarity). http://togogenome.org/gene/420247:MSM_RS03305 ^@ http://purl.uniprot.org/uniprot/A5UKY7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the LemA family.|||Membrane http://togogenome.org/gene/420247:MSM_RS01365 ^@ http://purl.uniprot.org/uniprot/A5UJV6 ^@ Similarity ^@ Belongs to the UPF0047 family. http://togogenome.org/gene/420247:MSM_RS02160 ^@ http://purl.uniprot.org/uniprot/A5UKB4 ^@ Function|||Similarity ^@ Belongs to the V-ATPase V0D/AC39 subunit family.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. http://togogenome.org/gene/420247:MSM_RS04470 ^@ http://purl.uniprot.org/uniprot/A5ULM1 ^@ Similarity ^@ Belongs to the UPF0146 family. http://togogenome.org/gene/420247:MSM_RS05770 ^@ http://purl.uniprot.org/uniprot/A5UMB8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TrpA family.|||Tetramer of two alpha and two beta chains.|||The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. http://togogenome.org/gene/420247:MSM_RS07075 ^@ http://purl.uniprot.org/uniprot/A5UN33 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Belongs to the radical SAM superfamily. MoaA family.|||Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine and 1 [4Fe-4S] cluster coordinated with 3 cysteines and the GTP-derived substrate.|||Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS01715 ^@ http://purl.uniprot.org/uniprot/A5UK27 ^@ Function|||Similarity|||Subunit ^@ Belongs to the alpha-IPM synthase/homocitrate synthase family.|||Catalyzes the condensation of pyruvate and acetyl-coenzyme A to form (R)-citramalate.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS02500 ^@ http://purl.uniprot.org/uniprot/A5UKI3 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the phosphohexose mutase family.|||Binds 1 Mg(2+) or Mn(2+) ion per subunit.|||Catalyzes the ATP- and formate-dependent formylation of 5-aminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'-monophosphate (FAICAR) in the absence of folates. http://togogenome.org/gene/420247:MSM_RS06740 ^@ http://purl.uniprot.org/uniprot/A5UMW3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the HdrA family.|||Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).|||The ferredoxin:CoB-CoM heterodisulfide reductase is composed of three subunits; HdrA, HdrB and HdrC. http://togogenome.org/gene/420247:MSM_RS00950 ^@ http://purl.uniprot.org/uniprot/A5UJM2 ^@ Function|||Similarity ^@ Belongs to the GTP-dependent DPCK family.|||Catalyzes the GTP-dependent phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A (CoA). http://togogenome.org/gene/420247:MSM_RS01120 ^@ http://purl.uniprot.org/uniprot/A5UJQ8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the type-I 3-dehydroquinase family.|||Homodimer.|||Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. http://togogenome.org/gene/420247:MSM_RS06330 ^@ http://purl.uniprot.org/uniprot/A5UMN0 ^@ Function|||Similarity|||Subunit ^@ Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).|||Belongs to the amidase family. GatA subfamily.|||Heterotrimer of A, B and C subunits. http://togogenome.org/gene/420247:MSM_RS00685 ^@ http://purl.uniprot.org/uniprot/A5UJG7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the archaeal phosphopantothenate synthetase family.|||Catalyzes the condensation of (R)-4-phosphopantoate and beta-alanine to 4'-phosphopantothenate in the CoA biosynthesis pathway.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS06200 ^@ http://purl.uniprot.org/uniprot/A5UMK4 ^@ Cofactor|||Similarity ^@ Belongs to the GARS family.|||Binds 2 magnesium or manganese ions per subunit. http://togogenome.org/gene/420247:MSM_RS07240 ^@ http://purl.uniprot.org/uniprot/A5UN66 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GHMP kinase family. Mevalonate kinase subfamily.|||Catalyzes the phosphorylation of (R)-mevalonate (MVA) to (R)-mevalonate 5-phosphate (MVAP). Functions in the mevalonate (MVA) pathway leading to isopentenyl diphosphate (IPP), a key precursor for the biosynthesis of isoprenoid compounds such as archaeal membrane lipids.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/420247:MSM_RS03900 ^@ http://purl.uniprot.org/uniprot/A5ULA8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS07805 ^@ http://purl.uniprot.org/uniprot/A5UNI6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS01400 ^@ http://purl.uniprot.org/uniprot/A5UJW3 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the glycerol-1-phosphate dehydrogenase family.|||Binds 1 zinc ion per subunit.|||Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1-phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea.|||Cytoplasm|||Homooctamer. http://togogenome.org/gene/420247:MSM_RS04105 ^@ http://purl.uniprot.org/uniprot/A5ULF0 ^@ Function ^@ Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate. http://togogenome.org/gene/420247:MSM_RS06255 ^@ http://purl.uniprot.org/uniprot/A5UML5 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the histidinol dehydrogenase family.|||Binds 1 zinc ion per subunit.|||Catalyzes the sequential NAD-dependent oxidations of L-histidinol to L-histidinaldehyde and then to L-histidine. http://togogenome.org/gene/420247:MSM_RS00905 ^@ http://purl.uniprot.org/uniprot/A5UJL3 ^@ Similarity ^@ Belongs to the IMPACT family. http://togogenome.org/gene/420247:MSM_RS00445 ^@ http://purl.uniprot.org/uniprot/A5UJC0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS02435 ^@ http://purl.uniprot.org/uniprot/A5UKH0 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the MscS (TC 1.A.23) family.|||Membrane http://togogenome.org/gene/420247:MSM_RS02115 ^@ http://purl.uniprot.org/uniprot/A5UKA5 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the 'phage' integrase family. XerA subfamily.|||Cytoplasm|||Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. http://togogenome.org/gene/420247:MSM_RS07670 ^@ http://purl.uniprot.org/uniprot/A5UNF8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS06735 ^@ http://purl.uniprot.org/uniprot/A5UMW1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the auxin efflux carrier (TC 2.A.69) family.|||Cell membrane|||Membrane http://togogenome.org/gene/420247:MSM_RS02095 ^@ http://purl.uniprot.org/uniprot/A5UKA1 ^@ Function|||Similarity ^@ Belongs to the TFIIB family.|||Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). http://togogenome.org/gene/420247:MSM_RS01335 ^@ http://purl.uniprot.org/uniprot/A5UJV0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the EPSP synthase family.|||Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.|||Cytoplasm|||Monomer. http://togogenome.org/gene/420247:MSM_RS05150 ^@ http://purl.uniprot.org/uniprot/A5UM00 ^@ Similarity ^@ Belongs to the ComB family. http://togogenome.org/gene/420247:MSM_RS01695 ^@ http://purl.uniprot.org/uniprot/A5UK22 ^@ Function|||Subunit ^@ Catalyzes the synthesis of GMP from XMP.|||Heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). http://togogenome.org/gene/420247:MSM_RS03930 ^@ http://purl.uniprot.org/uniprot/A5ULB5 ^@ Similarity ^@ Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/420247:MSM_RS02440 ^@ http://purl.uniprot.org/uniprot/A5UKH1 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the quinolinate synthase family. Type 2 subfamily.|||Binds 1 [4Fe-4S] cluster per subunit.|||Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS00985 ^@ http://purl.uniprot.org/uniprot/A5UJM9 ^@ Function|||Similarity ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.|||Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. http://togogenome.org/gene/420247:MSM_RS03205 ^@ http://purl.uniprot.org/uniprot/A5UKW7 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic release factor 1 family. Pelota subfamily.|||Cytoplasm|||May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity.|||Monomer.|||The N-terminal domain has the RNA-binding Sm fold. It harbors the endoribonuclease activity. http://togogenome.org/gene/420247:MSM_RS03115 ^@ http://purl.uniprot.org/uniprot/A5UKV0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL11 family.|||Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.|||Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex. http://togogenome.org/gene/420247:MSM_RS05420 ^@ http://purl.uniprot.org/uniprot/A5UM55 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the arsenical resistance-3 (ACR3) (TC 2.A.59) family.|||Membrane http://togogenome.org/gene/420247:MSM_RS05730 ^@ http://purl.uniprot.org/uniprot/A5UMB0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the eIF-2-alpha family.|||Heterotrimer composed of an alpha, a beta and a gamma chain.|||eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. http://togogenome.org/gene/420247:MSM_RS08115 ^@ http://purl.uniprot.org/uniprot/A5UNP6 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the CbiN family.|||Cell membrane|||Forms an energy-coupling factor (ECF) transporter complex composed of an ATP-binding protein (A component, CbiO), a transmembrane protein (T component, CbiQ) and 2 possible substrate-capture proteins (S components, CbiM and CbiN) of unknown stoichimetry.|||Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. http://togogenome.org/gene/420247:MSM_RS00645 ^@ http://purl.uniprot.org/uniprot/A5UJF9 ^@ Similarity ^@ Belongs to the tRNA methyltransferase O family. http://togogenome.org/gene/420247:MSM_RS03350 ^@ http://purl.uniprot.org/uniprot/A5UKZ5 ^@ Function|||Similarity ^@ Activates the tRNA-splicing ligase complex by facilitating the enzymatic turnover of catalytic subunit RtcB. Acts by promoting the guanylylation of RtcB, a key intermediate step in tRNA ligation. Can also alter the NTP specificity of RtcB such that ATP, dGTP or ITP is used efficiently.|||Belongs to the archease family. http://togogenome.org/gene/420247:MSM_RS06765 ^@ http://purl.uniprot.org/uniprot/A5UMW8 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.|||Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).|||Cytoplasm|||IleRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated valine is translocated from the active site to the editing site, which sterically excludes the correctly activated isoleucine. The single editing site contains two valyl binding pockets, one specific for each substrate (Val-AMP or Val-tRNA(Ile)).|||Monomer. http://togogenome.org/gene/420247:MSM_RS07590 ^@ http://purl.uniprot.org/uniprot/A5UNE0 ^@ Similarity ^@ Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/420247:MSM_RS03335 ^@ http://purl.uniprot.org/uniprot/A5UKZ2 ^@ Caution|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Although this enzyme belongs to the family of MTA phosphorylases based on sequence homology, it has been shown that conserved amino acid substitutions in the substrate binding pocket convert the substrate specificity of this enzyme from 6-aminopurines to 6-oxopurines.|||Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.|||Catalyzes the reversible phosphorylation of S-methyl-5'-thioinosine (MTI) to hypoxanthine and 5-methylthioribose-1-phosphate. Involved in the breakdown of S-methyl-5'-thioadenosine (MTA), a major by-product of polyamine biosynthesis. Catabolism of (MTA) occurs via deamination to MTI and phosphorolysis to hypoxanthine.|||Homotrimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS03100 ^@ http://purl.uniprot.org/uniprot/A5UKU7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein P1/P2 family.|||Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.|||Part of the 50S ribosomal subunit. Homodimer, it forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Forms a heptameric L10(L12)2(L12)2(L12)2 complex, where L10 forms an elongated spine to which the L12 dimers bind in a sequential fashion. http://togogenome.org/gene/420247:MSM_RS04440 ^@ http://purl.uniprot.org/uniprot/A5ULL5 ^@ Similarity|||Subunit ^@ Belongs to the Glu/Leu/Phe/Val dehydrogenases family.|||Homohexamer. http://togogenome.org/gene/420247:MSM_RS08125 ^@ http://purl.uniprot.org/uniprot/A5UNP8 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the ABC transporter superfamily.|||Cell membrane|||Part of an ABC transporter complex. Responsible for energy coupling to the transport system.|||Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system. http://togogenome.org/gene/420247:MSM_RS05445 ^@ http://purl.uniprot.org/uniprot/A5UM61 ^@ Caution|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the argininosuccinate synthase family. Type 1 subfamily.|||Cytoplasm|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS02320 ^@ http://purl.uniprot.org/uniprot/A5UKE6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the TMEM175 family.|||Membrane http://togogenome.org/gene/420247:MSM_RS03530 ^@ http://purl.uniprot.org/uniprot/A5UL33 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL39 family. http://togogenome.org/gene/420247:MSM_RS04290 ^@ http://purl.uniprot.org/uniprot/A5ULI5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the HisA/HisF family.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS02955 ^@ http://purl.uniprot.org/uniprot/A5UKR6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS05750 ^@ http://purl.uniprot.org/uniprot/A5UMB4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the PCNA family.|||Homotrimer. The subunits circularize to form a toroid; DNA passes through its center. Replication factor C (RFC) is required to load the toroid on the DNA.|||Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. http://togogenome.org/gene/420247:MSM_RS05250 ^@ http://purl.uniprot.org/uniprot/A5UM20 ^@ Cofactor ^@ Binds 1 [2Fe-2S] cluster per subunit. http://togogenome.org/gene/420247:MSM_RS01940 ^@ http://purl.uniprot.org/uniprot/A5UK69 ^@ Cofactor|||Function|||Subunit ^@ Binds 2 [4Fe-4S] clusters. In this family the first cluster has a non-standard and varying [4Fe-4S] binding motif CX(2)CX(2)CX(4-5)CP.|||Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.|||Heterodimer of the IorA and IorB subunits. http://togogenome.org/gene/420247:MSM_RS02325 ^@ http://purl.uniprot.org/uniprot/A5UKE7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS03915 ^@ http://purl.uniprot.org/uniprot/A5ULB2 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the eukaryotic CoaD family.|||Cytoplasm|||Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. http://togogenome.org/gene/420247:MSM_RS06415 ^@ http://purl.uniprot.org/uniprot/A5UMP7 ^@ Subunit ^@ Homotetramer. http://togogenome.org/gene/420247:MSM_RS02175 ^@ http://purl.uniprot.org/uniprot/A5UKB7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the V-ATPase 116 kDa subunit family.|||Membrane http://togogenome.org/gene/420247:MSM_RS05485 ^@ http://purl.uniprot.org/uniprot/A5UM69 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the FTR family.|||Catalyzes the reversible transfer of a formyl group from formylmethanofuran (formyl-MFR) to tetrahydromethanopterin (H(4)MPT) to produce 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) and methanofuran (MFR).|||Cytoplasm|||Homotetramer. http://togogenome.org/gene/420247:MSM_RS02235 ^@ http://purl.uniprot.org/uniprot/A5UKC9 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA.|||Belongs to the TiaS family.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS00485 ^@ http://purl.uniprot.org/uniprot/A5UJC8 ^@ Similarity ^@ Belongs to the precorrin methyltransferase family. http://togogenome.org/gene/420247:MSM_RS03460 ^@ http://purl.uniprot.org/uniprot/A5UL18 ^@ Similarity ^@ Belongs to the Nudix hydrolase family. http://togogenome.org/gene/420247:MSM_RS07695 ^@ http://purl.uniprot.org/uniprot/A5UNG3 ^@ Similarity ^@ Belongs to the DegT/DnrJ/EryC1 family. http://togogenome.org/gene/420247:MSM_RS04685 ^@ http://purl.uniprot.org/uniprot/A5ULQ7 ^@ Similarity ^@ Belongs to the FKBP-type PPIase family. http://togogenome.org/gene/420247:MSM_RS06845 ^@ http://purl.uniprot.org/uniprot/A5UMY5 ^@ Function|||Similarity ^@ Belongs to the DPH1/DPH2 family.|||Catalyzes the first step of diphthamide biosynthesis, i.e. the transfer of the 3-amino-3-carboxypropyl group from S-adenosyl-L-methionine (SAM) to the C2 position of the imidazole ring of the target histidine residue in translation elongation factor 2 (EF-2). http://togogenome.org/gene/420247:MSM_RS07275 ^@ http://purl.uniprot.org/uniprot/A5UN73 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the HCP family.|||Binds 1 [4Fe-4S] cluster.|||Binds 1 hybrid [4Fe-2O-2S] cluster.|||Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS07185 ^@ http://purl.uniprot.org/uniprot/A5UN54 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS11 family.|||Located on the platform of the 30S subunit.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS05180 ^@ http://purl.uniprot.org/uniprot/A5UM06 ^@ Similarity ^@ Belongs to the UPF0045 family. http://togogenome.org/gene/420247:MSM_RS00315 ^@ http://purl.uniprot.org/uniprot/A5UJ93 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS00285 ^@ http://purl.uniprot.org/uniprot/A5UJ87 ^@ Function|||Similarity ^@ Belongs to the GHMP kinase family. PoK subfamily.|||Phosphorylates (R)-pantoate to form (R)-4-phosphopantoate in the CoA biosynthesis pathway. http://togogenome.org/gene/420247:MSM_RS00995 ^@ http://purl.uniprot.org/uniprot/A5UJN1 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eL24 family.|||Binds 1 zinc ion per subunit.|||Binds to the 23S rRNA.|||Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L14. http://togogenome.org/gene/420247:MSM_RS07410 ^@ http://purl.uniprot.org/uniprot/A5UNA1 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the chorismate synthase family.|||Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.|||Reduced FMN (FMNH(2)). http://togogenome.org/gene/420247:MSM_RS05170 ^@ http://purl.uniprot.org/uniprot/A5UM04 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS02165 ^@ http://purl.uniprot.org/uniprot/A5UKB5 ^@ Function|||Similarity ^@ Belongs to the V-ATPase E subunit family.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. http://togogenome.org/gene/420247:MSM_RS04525 ^@ http://purl.uniprot.org/uniprot/A5ULN0 ^@ Similarity|||Subunit ^@ Belongs to the methyl-coenzyme M reductase gamma subunit family.|||Hexamer of two alpha, two beta, and two gamma chains.|||MCR is a hexamer of two alpha, two beta, and two gamma chains, forming a dimer of heterotrimers. http://togogenome.org/gene/420247:MSM_RS03590 ^@ http://purl.uniprot.org/uniprot/A5UL47 ^@ Function|||Similarity ^@ Belongs to the TBP family.|||General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. http://togogenome.org/gene/420247:MSM_RS02220 ^@ http://purl.uniprot.org/uniprot/A5UKC6 ^@ Similarity ^@ Belongs to the PrpD family. http://togogenome.org/gene/420247:MSM_RS01815 ^@ http://purl.uniprot.org/uniprot/A5UK44 ^@ Similarity ^@ Belongs to the UPF0305 family. http://togogenome.org/gene/420247:MSM_RS07430 ^@ http://purl.uniprot.org/uniprot/A5UNA5 ^@ Caution|||Cofactor|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily.|||Binds 2 magnesium ions per tetramer.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Tetramer of two alpha and two beta subunits. http://togogenome.org/gene/420247:MSM_RS01285 ^@ http://purl.uniprot.org/uniprot/A5UJU1 ^@ Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.|||Cytoplasm|||Homodimer. Forms a heterotetramer with IscU, interacts with other sulfur acceptors.|||In Archaea the pyridoxal phosphate cofactor is not covalently bound to Lys but ligated by other amino acids.|||Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. http://togogenome.org/gene/420247:MSM_RS03755 ^@ http://purl.uniprot.org/uniprot/A5UL79 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS17 family.|||One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS05375 ^@ http://purl.uniprot.org/uniprot/A5UM45 ^@ Subcellular Location Annotation ^@ Cell membrane|||Membrane http://togogenome.org/gene/420247:MSM_RS03230 ^@ http://purl.uniprot.org/uniprot/A5UKX2 ^@ Function|||Similarity ^@ Belongs to the ATP-dependent DNA ligase family.|||DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. http://togogenome.org/gene/420247:MSM_RS03715 ^@ http://purl.uniprot.org/uniprot/A5UL71 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL32 family. http://togogenome.org/gene/420247:MSM_RS03135 ^@ http://purl.uniprot.org/uniprot/A5UKV4 ^@ Similarity ^@ Belongs to the MtrH family. http://togogenome.org/gene/420247:MSM_RS07250 ^@ http://purl.uniprot.org/uniprot/A5UN68 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the IPP isomerase type 2 family.|||Cytoplasm|||Homooctamer. Dimer of tetramers.|||Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS03745 ^@ http://purl.uniprot.org/uniprot/A5UL77 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL24 family.|||Located at the polypeptide exit tunnel on the outside of the subunit.|||One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS06605 ^@ http://purl.uniprot.org/uniprot/A5UMT5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.|||Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS07165 ^@ http://purl.uniprot.org/uniprot/A5UN51 ^@ Function|||PTM|||Similarity ^@ An intermediate of this reaction is the autophosphorylated ppk in which a phosphate is covalently linked to a histidine residue through a N-P bond.|||Belongs to the polyphosphate kinase 1 (PPK1) family.|||Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). http://togogenome.org/gene/420247:MSM_RS03765 ^@ http://purl.uniprot.org/uniprot/A5UL81 ^@ Similarity ^@ Belongs to the SUI1 family. http://togogenome.org/gene/420247:MSM_RS03885 ^@ http://purl.uniprot.org/uniprot/A5ULA5 ^@ Function|||Similarity|||Subunit ^@ Associates with stalled 50S ribosomal subunits.|||Belongs to the NEMF family.|||Probably part of the ribosome quality control system (RQC). May mediate the addition of alanine residues (Ala tailing) to incompletely synthesized nascent chains from stalled ribosomes, leading to their degradation. http://togogenome.org/gene/420247:MSM_RS08510 ^@ http://purl.uniprot.org/uniprot/A5UNX8 ^@ Cofactor|||Function|||Miscellaneous|||Similarity ^@ Belongs to the geranylgeranyl reductase family. DGGGPL reductase subfamily.|||Binds 1 FAD per subunit.|||Is involved in the reduction of 2,3-digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di-O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains.|||Reduction reaction proceeds via syn addition of hydrogen for double bonds. http://togogenome.org/gene/420247:MSM_RS06955 ^@ http://purl.uniprot.org/uniprot/A5UN09 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.|||Cell membrane|||Involved in the import of queuosine (Q) precursors, required for Q precursor salvage. http://togogenome.org/gene/420247:MSM_RS04740 ^@ http://purl.uniprot.org/uniprot/A5ULR8 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the UbiA prenyltransferase family. DGGGP synthase subfamily.|||Cell membrane|||Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. http://togogenome.org/gene/420247:MSM_RS03515 ^@ http://purl.uniprot.org/uniprot/A5UL30 ^@ Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eL20 family.|||Part of the 50S ribosomal subunit. Binds 23S rRNA. http://togogenome.org/gene/420247:MSM_RS05115 ^@ http://purl.uniprot.org/uniprot/A5ULZ3 ^@ Similarity|||Subunit ^@ Belongs to the methyl-coenzyme M reductase gamma subunit family.|||Hexamer of two alpha, two beta, and two gamma chains.|||MCR is a hexamer of two alpha, two beta, and two gamma chains, forming a dimer of heterotrimers. http://togogenome.org/gene/420247:MSM_RS00275 ^@ http://purl.uniprot.org/uniprot/A5UJ85 ^@ Similarity ^@ Belongs to the helicase family. UvrD subfamily. http://togogenome.org/gene/420247:MSM_RS03795 ^@ http://purl.uniprot.org/uniprot/A5UL87 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL23 family.|||Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome.|||Part of the 50S ribosomal subunit. Contacts protein L29. http://togogenome.org/gene/420247:MSM_RS01305 ^@ http://purl.uniprot.org/uniprot/A5UJU5 ^@ Caution|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS06555 ^@ http://purl.uniprot.org/uniprot/A5UMS5 ^@ Similarity ^@ Belongs to the isocitrate and isopropylmalate dehydrogenases family. http://togogenome.org/gene/420247:MSM_RS00910 ^@ http://purl.uniprot.org/uniprot/A5UJL4 ^@ Function ^@ Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule. http://togogenome.org/gene/420247:MSM_RS05840 ^@ http://purl.uniprot.org/uniprot/A5UMD2 ^@ Similarity ^@ Belongs to the UPF0107 family. http://togogenome.org/gene/420247:MSM_RS04745 ^@ http://purl.uniprot.org/uniprot/A5ULR9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS04975 ^@ http://purl.uniprot.org/uniprot/A5ULW5 ^@ Function|||Similarity ^@ Belongs to the PEP-utilizing enzyme family.|||Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate. http://togogenome.org/gene/420247:MSM_RS07245 ^@ http://purl.uniprot.org/uniprot/A5UN67 ^@ Function|||Similarity|||Subunit ^@ Belongs to the isopentenyl phosphate kinase family.|||Catalyzes the formation of isopentenyl diphosphate (IPP), the building block of all isoprenoids.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS05960 ^@ http://purl.uniprot.org/uniprot/A5UMF6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the shikimate dehydrogenase family.|||Homodimer.|||Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). http://togogenome.org/gene/420247:MSM_RS00615 ^@ http://purl.uniprot.org/uniprot/A5UJF3 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Aminocarboxypropyltransferase that catalyzes the aminocarboxypropyl transfer on pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. It constitutes the last step in biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi).|||Belongs to the TDD superfamily. TSR3 family.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS05265 ^@ http://purl.uniprot.org/uniprot/A5UM23 ^@ Similarity ^@ Belongs to the NOP5/NOP56 family. http://togogenome.org/gene/420247:MSM_RS02510 ^@ http://purl.uniprot.org/uniprot/A5UKI5 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family.|||Cytoplasm|||Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS05410 ^@ http://purl.uniprot.org/uniprot/A5UM52 ^@ Subcellular Location Annotation ^@ Cell membrane|||Membrane http://togogenome.org/gene/420247:MSM_RS02525 ^@ http://purl.uniprot.org/uniprot/A5UKI8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the eIF-2-beta/eIF-5 family.|||Heterotrimer composed of an alpha, a beta and a gamma chain.|||eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. http://togogenome.org/gene/420247:MSM_RS02210 ^@ http://purl.uniprot.org/uniprot/A5UKC4 ^@ Similarity ^@ Belongs to the class-I fumarase family. http://togogenome.org/gene/420247:MSM_RS06835 ^@ http://purl.uniprot.org/uniprot/A5UMY3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the archaeal Rpo11/eukaryotic RPB11/RPC19 RNA polymerase subunit family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/420247:MSM_RS01530 ^@ http://purl.uniprot.org/uniprot/A5UJY9 ^@ Similarity ^@ Belongs to the complex I 49 kDa subunit family. http://togogenome.org/gene/420247:MSM_RS04960 ^@ http://purl.uniprot.org/uniprot/A5ULW2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the archaeal dihydroneopterin aldolase family.|||Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD).|||Homotetramer. http://togogenome.org/gene/420247:MSM_RS06090 ^@ http://purl.uniprot.org/uniprot/A5UMI1 ^@ Function|||Similarity ^@ Belongs to the MTD family.|||Catalyzes the reversible reduction of methenyl-H(4)MPT(+) to methylene-H(4)MPT. http://togogenome.org/gene/420247:MSM_RS07760 ^@ http://purl.uniprot.org/uniprot/A5UNH7 ^@ Similarity ^@ Belongs to the precorrin methyltransferase family. http://togogenome.org/gene/420247:MSM_RS03505 ^@ http://purl.uniprot.org/uniprot/A5UL28 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GTP-binding SRP family. FtsY subfamily.|||Cell membrane|||Cytoplasm|||Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).|||Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. http://togogenome.org/gene/420247:MSM_RS03075 ^@ http://purl.uniprot.org/uniprot/A5UKU2 ^@ Domain|||Function|||Similarity|||Subunit ^@ Belongs to the FBP aldolase/phosphatase family.|||Catalyzes two subsequent steps in gluconeogenesis: the aldol condensation of dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3-phosphate (GA3P) to fructose-1,6-bisphosphate (FBP), and the dephosphorylation of FBP to fructose-6-phosphate (F6P).|||Consists of a single catalytic domain, but remodels its active-site architecture via a large structural change to exhibit dual activities.|||Homooctamer; dimer of tetramers. http://togogenome.org/gene/420247:MSM_RS07925 ^@ http://purl.uniprot.org/uniprot/A5UNK8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ABC transporter superfamily. UvrA family.|||Cytoplasm|||Forms a heterotetramer with UvrB during the search for lesions.|||The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. http://togogenome.org/gene/420247:MSM_RS01155 ^@ http://purl.uniprot.org/uniprot/A5UJR5 ^@ Function|||Similarity ^@ Belongs to the methyltransferase superfamily. Archaeal-type CbiT family.|||Catalyzes the methylation of C-15 in cobalt-precorrin-6B followed by the decarboxylation of C-12 to form cobalt-precorrin-7. http://togogenome.org/gene/420247:MSM_RS05040 ^@ http://purl.uniprot.org/uniprot/A5ULX8 ^@ Similarity ^@ Belongs to the MvhD/VhuD family. http://togogenome.org/gene/420247:MSM_RS04865 ^@ http://purl.uniprot.org/uniprot/A5ULU3 ^@ Similarity ^@ Belongs to the AAA ATPase family. http://togogenome.org/gene/420247:MSM_RS04095 ^@ http://purl.uniprot.org/uniprot/A5ULE8 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily.|||Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS01875 ^@ http://purl.uniprot.org/uniprot/A5UK56 ^@ Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ArgJ family.|||Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate.|||Cytoplasm|||Heterotetramer of two alpha and two beta chains.|||Some bacteria possess a monofunctional ArgJ, i.e., capable of catalyzing only the fifth step of the arginine biosynthetic pathway. http://togogenome.org/gene/420247:MSM_RS07745 ^@ http://purl.uniprot.org/uniprot/A5UNH4 ^@ Similarity ^@ Belongs to the SAICAR synthetase family. http://togogenome.org/gene/420247:MSM_RS07175 ^@ http://purl.uniprot.org/uniprot/A5UN52 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS13 family.|||Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement.|||Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome. http://togogenome.org/gene/420247:MSM_RS05395 ^@ http://purl.uniprot.org/uniprot/A5UM49 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS02860 ^@ http://purl.uniprot.org/uniprot/A5UKP9 ^@ Function|||Similarity ^@ Belongs to the HMD family.|||Catalyzes the reversible reduction of methenyl-H(4)MPT(+) to methylene-H(4)MPT. http://togogenome.org/gene/420247:MSM_RS02310 ^@ http://purl.uniprot.org/uniprot/A5UKE4 ^@ Similarity|||Subunit ^@ Belongs to the aldehyde dehydrogenase family.|||Homotetramer. http://togogenome.org/gene/420247:MSM_RS07050 ^@ http://purl.uniprot.org/uniprot/A5UN28 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the exbB/tolQ family.|||Membrane http://togogenome.org/gene/420247:MSM_RS00845 ^@ http://purl.uniprot.org/uniprot/A5UJK1 ^@ Similarity ^@ Belongs to the trans-sulfuration enzymes family. http://togogenome.org/gene/420247:MSM_RS03225 ^@ http://purl.uniprot.org/uniprot/A5UKX1 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the ThiC family.|||Binds 1 [4Fe-4S] cluster per subunit. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. http://togogenome.org/gene/420247:MSM_RS04900 ^@ http://purl.uniprot.org/uniprot/A5ULV0 ^@ Function|||Similarity ^@ Belongs to the archaeal-type GTP cyclohydrolase family.|||Catalyzes the formation of 2-amino-5-formylamino-6-ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. Also has an independent pyrophosphate phosphohydrolase activity. http://togogenome.org/gene/420247:MSM_RS05555 ^@ http://purl.uniprot.org/uniprot/A5UM78 ^@ Function|||Similarity|||Subunit ^@ Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).|||Belongs to the GatB/GatE family. GatB subfamily.|||Heterotrimer of A, B and C subunits. http://togogenome.org/gene/420247:MSM_RS05735 ^@ http://purl.uniprot.org/uniprot/A5UMB1 ^@ Cofactor|||Similarity ^@ Belongs to the eukaryotic ribosomal protein eS27 family.|||Binds 1 zinc ion per subunit. http://togogenome.org/gene/420247:MSM_RS04715 ^@ http://purl.uniprot.org/uniprot/A5ULR3 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the QueC family.|||Binds 1 zinc ion per subunit.|||Catalyzes the ATP-dependent conversion of 7-carboxy-7-deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). http://togogenome.org/gene/420247:MSM_RS01170 ^@ http://purl.uniprot.org/uniprot/A5UJR8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RNase PH family. Rrp42 subfamily.|||Component of the archaeal exosome complex. Forms a hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 heterodimers. The hexameric ring associates with a trimer of Rrp4 and/or Csl4 subunits.|||Cytoplasm|||Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. http://togogenome.org/gene/420247:MSM_RS03585 ^@ http://purl.uniprot.org/uniprot/A5UL46 ^@ Similarity ^@ Belongs to the HAD-like hydrolase superfamily. SerB family. http://togogenome.org/gene/420247:MSM_RS04350 ^@ http://purl.uniprot.org/uniprot/A5ULJ7 ^@ Similarity ^@ Belongs to the small heat shock protein (HSP20) family. http://togogenome.org/gene/420247:MSM_RS05925 ^@ http://purl.uniprot.org/uniprot/A5UME9 ^@ Caution|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS01970 ^@ http://purl.uniprot.org/uniprot/A5UK75 ^@ Similarity ^@ Belongs to the UPRTase family. http://togogenome.org/gene/420247:MSM_RS01935 ^@ http://purl.uniprot.org/uniprot/A5UK68 ^@ Function|||Subunit ^@ Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.|||Heterodimer of the IorA and IorB subunits. http://togogenome.org/gene/420247:MSM_RS04300 ^@ http://purl.uniprot.org/uniprot/A5ULI7 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.|||Catalyzes the NADPH-dependent reduction of N-acetyl-5-glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS01995 ^@ http://purl.uniprot.org/uniprot/A5UK80 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the class-II aminoacyl-tRNA synthetase family.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS00375 ^@ http://purl.uniprot.org/uniprot/A5UJA6 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the radical SAM superfamily. CofH family.|||Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Catalyzes the radical-mediated synthesis of 5-amino-5-(4-hydroxybenzyl)-6-(D-ribitylimino)-5,6-dihydrouracil from 5-amino-6-(D-ribitylamino)uracil and L-tyrosine.|||The FO synthase complex consists of two subunits, CofG and CofH. http://togogenome.org/gene/420247:MSM_RS02710 ^@ http://purl.uniprot.org/uniprot/A5UKL9 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the mer family.|||Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS01195 ^@ http://purl.uniprot.org/uniprot/A5UJS3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic/archaeal RNase P protein component 2 family.|||Consists of a catalytic RNA component and at least 4-5 protein subunits.|||Cytoplasm|||Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. http://togogenome.org/gene/420247:MSM_RS02290 ^@ http://purl.uniprot.org/uniprot/A5UKE0 ^@ Similarity ^@ Belongs to the tRNA(His) guanylyltransferase family. http://togogenome.org/gene/420247:MSM_RS08110 ^@ http://purl.uniprot.org/uniprot/A5UNP5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the CbiM family.|||Cell membrane|||Forms an energy-coupling factor (ECF) transporter complex composed of an ATP-binding protein (A component, CbiO), a transmembrane protein (T component, CbiQ) and 2 possible substrate-capture proteins (S components, CbiM and CbiN) of unknown stoichimetry.|||Membrane|||Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. http://togogenome.org/gene/420247:MSM_RS02070 ^@ http://purl.uniprot.org/uniprot/A5UK95 ^@ Similarity ^@ Belongs to the UPF0145 family. http://togogenome.org/gene/420247:MSM_RS03800 ^@ http://purl.uniprot.org/uniprot/A5UL88 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL4 family.|||Forms part of the polypeptide exit tunnel.|||One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS02425 ^@ http://purl.uniprot.org/uniprot/A5UKG8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the NadC/ModD family.|||Hexamer formed by 3 homodimers.|||Involved in the catabolism of quinolinic acid (QA). http://togogenome.org/gene/420247:MSM_RS06870 ^@ http://purl.uniprot.org/uniprot/A5UMZ0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SEC61-beta family.|||Cell membrane|||Component of the protein translocase complex. Heterotrimer consisting of alpha (SecY), beta (SecG) and gamma (SecE) subunits. Can form oligomers of the heterotrimer.|||Involved in protein export. The function of the beta subunit is unknown, but it may be involved in stabilization of the trimeric complex.|||Membrane http://togogenome.org/gene/420247:MSM_RS08190 ^@ http://purl.uniprot.org/uniprot/A5UNR1 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the prefoldin subunit beta family.|||Cytoplasm|||Heterohexamer of two alpha and four beta subunits.|||Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. http://togogenome.org/gene/420247:MSM_RS00460 ^@ http://purl.uniprot.org/uniprot/A5UJC3 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the UPP synthase family.|||Binds 2 magnesium ions per subunit.|||Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS08120 ^@ http://purl.uniprot.org/uniprot/A5UNP7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS08945 ^@ http://purl.uniprot.org/uniprot/A5UP69 ^@ Similarity ^@ Belongs to the NAPRTase family. http://togogenome.org/gene/420247:MSM_RS00435 ^@ http://purl.uniprot.org/uniprot/A5UJB8 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the cyclic 2,3-diphosphoglycerate synthetase family.|||Catalyzes the formation of cyclic 2,3-diphosphoglycerate (cDPG) by formation of an intramolecular phosphoanhydride bond at the expense of ATP.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS03750 ^@ http://purl.uniprot.org/uniprot/A5UL78 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL14 family.|||Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.|||Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges. http://togogenome.org/gene/420247:MSM_RS04120 ^@ http://purl.uniprot.org/uniprot/A5ULF3 ^@ Similarity ^@ Belongs to the TCP-1 chaperonin family. http://togogenome.org/gene/420247:MSM_RS02170 ^@ http://purl.uniprot.org/uniprot/A5UKB6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the V-ATPase proteolipid subunit family.|||Membrane http://togogenome.org/gene/420247:MSM_RS07260 ^@ http://purl.uniprot.org/uniprot/A5UN70 ^@ Similarity ^@ Belongs to the FPP/GGPP synthase family. http://togogenome.org/gene/420247:MSM_RS05565 ^@ http://purl.uniprot.org/uniprot/A5UM80 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the PRA-PH family.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS07350 ^@ http://purl.uniprot.org/uniprot/A5UN88 ^@ Similarity ^@ Belongs to the MvhD/VhuD family. http://togogenome.org/gene/420247:MSM_RS04615 ^@ http://purl.uniprot.org/uniprot/A5ULP3 ^@ Function|||Similarity ^@ Belongs to the Thz kinase family.|||Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ). http://togogenome.org/gene/420247:MSM_RS03785 ^@ http://purl.uniprot.org/uniprot/A5UL85 ^@ Function|||Similarity ^@ Belongs to the universal ribosomal protein uS19 family.|||Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. http://togogenome.org/gene/420247:MSM_RS07915 ^@ http://purl.uniprot.org/uniprot/A5UNK6 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the UvrB family.|||Cytoplasm|||Forms a heterotetramer with UvrA during the search for lesions. Interacts with UvrC in an incision complex.|||The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage.|||The beta-hairpin motif is involved in DNA binding. http://togogenome.org/gene/420247:MSM_RS00390 ^@ http://purl.uniprot.org/uniprot/A5UJA9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the HdrA family.|||Belongs to the MvhD/VhuD family.|||Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).|||The ferredoxin:CoB-CoM heterodisulfide reductase is composed of three subunits; HdrA, HdrB and HdrC. http://togogenome.org/gene/420247:MSM_RS00420 ^@ http://purl.uniprot.org/uniprot/A5UJB5 ^@ Similarity ^@ Belongs to the UPF0280 family. http://togogenome.org/gene/420247:MSM_RS04510 ^@ http://purl.uniprot.org/uniprot/A5ULM7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS7 family.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS08105 ^@ http://purl.uniprot.org/uniprot/A5UNP4 ^@ Similarity ^@ Belongs to the OMP decarboxylase family. http://togogenome.org/gene/420247:MSM_RS08605 ^@ http://purl.uniprot.org/uniprot/A5UNZ8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS01040 ^@ http://purl.uniprot.org/uniprot/A5UJP1 ^@ Function|||Similarity ^@ Belongs to the threonine synthase family.|||Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine. http://togogenome.org/gene/420247:MSM_RS02880 ^@ http://purl.uniprot.org/uniprot/A5UKQ3 ^@ Similarity ^@ Belongs to the GTP cyclohydrolase I type 2/NIF3 family. http://togogenome.org/gene/420247:MSM_RS01990 ^@ http://purl.uniprot.org/uniprot/A5UK79 ^@ Function|||Similarity|||Subunit ^@ Belongs to the dCTP deaminase family.|||Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.|||Homotrimer. http://togogenome.org/gene/420247:MSM_RS03085 ^@ http://purl.uniprot.org/uniprot/A5UKU4 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the ThiI family.|||Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS04795 ^@ http://purl.uniprot.org/uniprot/A5ULS9 ^@ Similarity ^@ Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. http://togogenome.org/gene/420247:MSM_RS07155 ^@ http://purl.uniprot.org/uniprot/A5UN49 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the LemA family.|||Membrane http://togogenome.org/gene/420247:MSM_RS06140 ^@ http://purl.uniprot.org/uniprot/A5UMJ1 ^@ Cofactor|||Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family.|||Binds 1 zinc ion per subunit.|||Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).|||Cytoplasm|||Homodimer.|||The N-terminal domain is an archaea-specific tRNA-editing domain that hydrolyzes incorrectly charged L-seryl-tRNA(Thr). Catalysis of tRNA editing is performed by the charged tRNA itself. http://togogenome.org/gene/420247:MSM_RS04870 ^@ http://purl.uniprot.org/uniprot/A5ULU4 ^@ Domain|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Belongs to the glutamyl-tRNA reductase family.|||Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).|||During catalysis, the active site Cys acts as a nucleophile attacking the alpha-carbonyl group of tRNA-bound glutamate with the formation of a thioester intermediate between enzyme and glutamate, and the concomitant release of tRNA(Glu). The thioester intermediate is finally reduced by direct hydride transfer from NADPH, to form the product GSA.|||Homodimer.|||Possesses an unusual extended V-shaped dimeric structure with each monomer consisting of three distinct domains arranged along a curved 'spinal' alpha-helix. The N-terminal catalytic domain specifically recognizes the glutamate moiety of the substrate. The second domain is the NADPH-binding domain, and the third C-terminal domain is responsible for dimerization. http://togogenome.org/gene/420247:MSM_RS07690 ^@ http://purl.uniprot.org/uniprot/A5UNG2 ^@ Similarity ^@ Belongs to the polysaccharide synthase family. http://togogenome.org/gene/420247:MSM_RS06365 ^@ http://purl.uniprot.org/uniprot/A5UMN7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the archaeal histone HMF family.|||Chromosome|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS04020 ^@ http://purl.uniprot.org/uniprot/A5ULD3 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane|||Membrane http://togogenome.org/gene/420247:MSM_RS07810 ^@ http://purl.uniprot.org/uniprot/A5UNI7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS03235 ^@ http://purl.uniprot.org/uniprot/A5UKX3 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.|||Cell membrane|||Involved in the import of queuosine (Q) precursors, required for Q precursor salvage. http://togogenome.org/gene/420247:MSM_RS04500 ^@ http://purl.uniprot.org/uniprot/A5ULM5 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.|||Cytoplasm|||This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. http://togogenome.org/gene/420247:MSM_RS08480 ^@ http://purl.uniprot.org/uniprot/A5UNX2 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the UvrC family.|||Cytoplasm|||Interacts with UvrB in an incision complex.|||The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. http://togogenome.org/gene/420247:MSM_RS05920 ^@ http://purl.uniprot.org/uniprot/A5UME8 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the NAD synthetase family.|||Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS01480 ^@ http://purl.uniprot.org/uniprot/A5UJX9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/420247:MSM_RS06865 ^@ http://purl.uniprot.org/uniprot/A5UMY9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the MoaC family.|||Catalyzes the conversion of (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP).|||Homohexamer; trimer of dimers. http://togogenome.org/gene/420247:MSM_RS06105 ^@ http://purl.uniprot.org/uniprot/A5UMI4 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ModE family.|||Membrane http://togogenome.org/gene/420247:MSM_RS07990 ^@ http://purl.uniprot.org/uniprot/A5UNM0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS00940 ^@ http://purl.uniprot.org/uniprot/A5UJM0 ^@ Caution|||Cofactor|||Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eS31 family.|||Binds 1 zinc ion per subunit.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS03740 ^@ http://purl.uniprot.org/uniprot/A5UL76 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eS4 family. http://togogenome.org/gene/420247:MSM_RS08175 ^@ http://purl.uniprot.org/uniprot/A5UNQ8 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the archaeal Rpo12/eukaryotic RPC10 RNA polymerase subunit family.|||Binds 1 zinc ion.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/420247:MSM_RS01505 ^@ http://purl.uniprot.org/uniprot/A5UJY4 ^@ Similarity ^@ Belongs to the carbohydrate kinase PfkB family. http://togogenome.org/gene/420247:MSM_RS00975 ^@ http://purl.uniprot.org/uniprot/A5UJM7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EIF2G subfamily.|||Heterotrimer composed of an alpha, a beta and a gamma chain.|||eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. http://togogenome.org/gene/420247:MSM_RS06110 ^@ http://purl.uniprot.org/uniprot/A5UMI5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS05655 ^@ http://purl.uniprot.org/uniprot/A5UM97 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily.|||Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.|||Monomer.|||Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). http://togogenome.org/gene/420247:MSM_RS05450 ^@ http://purl.uniprot.org/uniprot/A5UM62 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS02120 ^@ http://purl.uniprot.org/uniprot/A5UKA6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the BioY family.|||Cell membrane http://togogenome.org/gene/420247:MSM_RS03215 ^@ http://purl.uniprot.org/uniprot/A5UKW9 ^@ Similarity ^@ Belongs to the AAA ATPase family. CDC48 subfamily. http://togogenome.org/gene/420247:MSM_RS00525 ^@ http://purl.uniprot.org/uniprot/A5UJD5 ^@ Function|||Similarity ^@ Belongs to the HypA/HybF family.|||Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. http://togogenome.org/gene/420247:MSM_RS06220 ^@ http://purl.uniprot.org/uniprot/A5UMK8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS04555 ^@ http://purl.uniprot.org/uniprot/A5ULN6 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RNA polymerase beta' chain family.|||Binds at least 2 Zn(2+) per subunit.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Forms the clamp head domain.|||DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/420247:MSM_RS00585 ^@ http://purl.uniprot.org/uniprot/A5UJE7 ^@ Cofactor|||Domain|||Function|||Similarity|||Subunit ^@ Belongs to the SMC family. RAD50 subfamily.|||Binds 1 zinc ion per homodimer.|||Homodimer. Forms a heterotetramer composed of two Mre11 subunits and two Rad50 subunits.|||Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex.|||The two conserved Cys that bind zinc constitute the zinc-hook, which separates the large intramolecular coiled coil regions. The 2 Cys residues coordinate one molecule of zinc with the help of the 2 Cys residues of the zinc-hook of another Rad50 molecule, thereby forming a V-shaped homodimer. http://togogenome.org/gene/420247:MSM_RS07825 ^@ http://purl.uniprot.org/uniprot/A5UNI8 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. UPF0219 family. http://togogenome.org/gene/420247:MSM_RS04225 ^@ http://purl.uniprot.org/uniprot/A5ULH2 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the methylthiotransferase family. CDKAL1 subfamily.|||Binds 1 or 2 [4Fe-4S] cluster. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Catalyzes the methylthiolation of N6-threonylcarbamoyladenosine (t(6)A), leading to the formation of 2-methylthio-N6-threonylcarbamoyladenosine (ms(2)t(6)A) at position 37 in tRNAs that read codons beginning with adenine. http://togogenome.org/gene/420247:MSM_RS08075 ^@ http://purl.uniprot.org/uniprot/A5UNN7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane|||Membrane http://togogenome.org/gene/420247:MSM_RS05475 ^@ http://purl.uniprot.org/uniprot/A5UM67 ^@ Similarity ^@ Belongs to the SfsA family. http://togogenome.org/gene/420247:MSM_RS07530 ^@ http://purl.uniprot.org/uniprot/A5UNC5 ^@ Similarity ^@ Belongs to the DEAD box helicase family. http://togogenome.org/gene/420247:MSM_RS01950 ^@ http://purl.uniprot.org/uniprot/A5UK71 ^@ Similarity ^@ Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. http://togogenome.org/gene/420247:MSM_RS03065 ^@ http://purl.uniprot.org/uniprot/A5UKU0 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CDP-alcohol phosphatidyltransferase class-I family.|||Binds 2 Mg(2+) or Mn(2+) ions per subunit.|||Catalyzes the formation of archaetidylinositol phosphate (AIP) from CDP-archaeol (CDP-ArOH or CDP-2,3-bis-(O-phytanyl)-sn-glycerol) and 1L-myo-inositol 1-phosphate (IP or 1D-myo-inositol 3-phosphate). AIP is a precursor of archaetidyl-myo-inositol (AI), an ether-type inositol phospholipid ubiquitously distributed in archaea membranes and essential for glycolipid biosynthesis in archaea.|||Cell membrane http://togogenome.org/gene/420247:MSM_RS05165 ^@ http://purl.uniprot.org/uniprot/A5UM03 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS03725 ^@ http://purl.uniprot.org/uniprot/A5UL73 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS8 family.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS03555 ^@ http://purl.uniprot.org/uniprot/A5UL38 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic/archaeal RNase P protein component 4 family.|||Binds 1 zinc ion per subunit.|||Consists of a catalytic RNA component and at least 4-5 protein subunits.|||Cytoplasm|||Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. http://togogenome.org/gene/420247:MSM_RS04415 ^@ http://purl.uniprot.org/uniprot/A5ULL0 ^@ Similarity ^@ Belongs to the purine/pyrimidine phosphoribosyltransferase family. http://togogenome.org/gene/420247:MSM_RS01475 ^@ http://purl.uniprot.org/uniprot/A5UJX8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane|||Membrane http://togogenome.org/gene/420247:MSM_RS04090 ^@ http://purl.uniprot.org/uniprot/A5ULE7 ^@ Similarity ^@ Belongs to the MoaB/Mog family. http://togogenome.org/gene/420247:MSM_RS04175 ^@ http://purl.uniprot.org/uniprot/A5ULG4 ^@ Function|||Similarity ^@ Belongs to the CbiD family.|||Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A. http://togogenome.org/gene/420247:MSM_RS07440 ^@ http://purl.uniprot.org/uniprot/A5UNA7 ^@ Function|||Similarity ^@ Belongs to the HAD-like hydrolase superfamily.|||Catalyzes the dephosphorylation of D,L-glyceraldehyde 3-phosphate in vitro. http://togogenome.org/gene/420247:MSM_RS04010 ^@ http://purl.uniprot.org/uniprot/A5ULD1 ^@ Function|||Similarity ^@ Belongs to the EIF-2B alpha/beta/delta subunits family. MtnA subfamily.|||Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). http://togogenome.org/gene/420247:MSM_RS00210 ^@ http://purl.uniprot.org/uniprot/A5UJ72 ^@ Function|||Similarity|||Subunit ^@ Belongs to the Mrp/NBP35 ATP-binding proteins family.|||Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS01910 ^@ http://purl.uniprot.org/uniprot/A5UK63 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.|||Membrane http://togogenome.org/gene/420247:MSM_RS01000 ^@ http://purl.uniprot.org/uniprot/A5UJN2 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eS28 family. http://togogenome.org/gene/420247:MSM_RS06100 ^@ http://purl.uniprot.org/uniprot/A5UMI3 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the imidazoleglycerol-phosphate dehydratase family.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS05740 ^@ http://purl.uniprot.org/uniprot/A5UMB2 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eL42 family.|||Binds 1 zinc ion per subunit.|||Binds to the 23S rRNA.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS02570 ^@ http://purl.uniprot.org/uniprot/A5UKJ7 ^@ Similarity ^@ Belongs to the thymidylate kinase family. http://togogenome.org/gene/420247:MSM_RS00345 ^@ http://purl.uniprot.org/uniprot/A5UJA0 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic-type primase large subunit family.|||Binds 1 [4Fe-4S] cluster.|||Heterodimer of a small subunit (PriS) and a large subunit (PriL).|||Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair. http://togogenome.org/gene/420247:MSM_RS08185 ^@ http://purl.uniprot.org/uniprot/A5UNR0 ^@ Similarity ^@ Belongs to the CTAG/PCC1 family. http://togogenome.org/gene/420247:MSM_RS03055 ^@ http://purl.uniprot.org/uniprot/A5UKT8 ^@ Function|||Similarity ^@ Belongs to the eukaryotic RecA-like protein family. RadB subfamily.|||Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange. http://togogenome.org/gene/420247:MSM_RS06135 ^@ http://purl.uniprot.org/uniprot/A5UMJ0 ^@ Caution|||Function|||Similarity ^@ Catalyzes the condensation of formaldehyde with tetrahydromethanopterin (H(4)MPT) to 5,10-methylenetetrahydromethanopterin.|||Catalyzes the reversible formation of ribulose-5-phosphate and formaldehyde from 3-hexulose-6-phosphate.|||In the C-terminal section; belongs to the HPS/KGPDC family. HPS subfamily.|||In the N-terminal section; belongs to the formaldehyde-activating enzyme family.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS01165 ^@ http://purl.uniprot.org/uniprot/A5UJR7 ^@ Caution|||Domain|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MobA family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||The N-terminal domain determines nucleotide recognition and specific binding, while the C-terminal domain determines the specific binding to the target protein.|||Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor. http://togogenome.org/gene/420247:MSM_RS04055 ^@ http://purl.uniprot.org/uniprot/A5ULE0 ^@ Similarity ^@ Belongs to the UPF0288 family. http://togogenome.org/gene/420247:MSM_RS06990 ^@ http://purl.uniprot.org/uniprot/A5UN16 ^@ Similarity ^@ Belongs to the carbohydrate kinase PfkB family. http://togogenome.org/gene/420247:MSM_RS08130 ^@ http://purl.uniprot.org/uniprot/A5UNP9 ^@ Similarity ^@ Belongs to the DMRL synthase family. http://togogenome.org/gene/420247:MSM_RS05075 ^@ http://purl.uniprot.org/uniprot/A5ULY5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the MtrG family.|||Cell membrane|||Part of a complex that catalyzes the formation of methyl-coenzyme M and tetrahydromethanopterin from coenzyme M and methyl-tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.|||The complex is composed of 8 subunits; MtrA, MtrB, MtrC, MtrD, MtrE, MtrF, MtrG and MtrH. http://togogenome.org/gene/420247:MSM_RS07420 ^@ http://purl.uniprot.org/uniprot/A5UNA3 ^@ Similarity|||Subunit ^@ Belongs to the ALAD family.|||Homooctamer. http://togogenome.org/gene/420247:MSM_RS01855 ^@ http://purl.uniprot.org/uniprot/A5UK52 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the acetylglutamate kinase family. ArgB subfamily.|||Catalyzes the ATP-dependent phosphorylation of N-acetyl-L-glutamate.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS04625 ^@ http://purl.uniprot.org/uniprot/A5ULP5 ^@ Caution|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the phosphoglycerate kinase family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. http://togogenome.org/gene/420247:MSM_RS00805 ^@ http://purl.uniprot.org/uniprot/A5UJJ3 ^@ Similarity ^@ In the N-terminal section; belongs to the CRISPR-associated nuclease Cas3-HD family.|||In the central section; belongs to the CRISPR-associated helicase Cas3 family. http://togogenome.org/gene/420247:MSM_RS05220 ^@ http://purl.uniprot.org/uniprot/A5UM14 ^@ Activity Regulation|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peptidase T1B family.|||Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.|||Cytoplasm|||The 20S proteasome core is composed of 14 alpha and 14 beta subunits that assemble into four stacked heptameric rings, resulting in a barrel-shaped structure. The two inner rings, each composed of seven catalytic beta subunits, are sandwiched by two outer rings, each composed of seven alpha subunits. The catalytic chamber with the active sites is on the inside of the barrel. Has a gated structure, the ends of the cylinder being occluded by the N-termini of the alpha-subunits. Is capped at one or both ends by the proteasome regulatory ATPase, PAN.|||The formation of the proteasomal ATPase PAN-20S proteasome complex, via the docking of the C-termini of PAN into the intersubunit pockets in the alpha-rings, triggers opening of the gate for substrate entry. Interconversion between the open-gate and close-gate conformations leads to a dynamic regulation of the 20S proteasome proteolysis activity. http://togogenome.org/gene/420247:MSM_RS01100 ^@ http://purl.uniprot.org/uniprot/A5UJQ4 ^@ Similarity ^@ Belongs to the HMG-CoA reductase family. http://togogenome.org/gene/420247:MSM_RS05675 ^@ http://purl.uniprot.org/uniprot/A5UMA1 ^@ Similarity ^@ Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. http://togogenome.org/gene/420247:MSM_RS06250 ^@ http://purl.uniprot.org/uniprot/A5UML4 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the IlvD/Edd family.|||Binds 1 [2Fe-2S] cluster per subunit. This cluster acts as a Lewis acid cofactor.|||Functions in the biosynthesis of branched-chain amino acids. Catalyzes the dehydration of (2R,3R)-2,3-dihydroxy-3-methylpentanoate (2,3-dihydroxy-3-methylvalerate) into 2-oxo-3-methylpentanoate (2-oxo-3-methylvalerate) and of (2R)-2,3-dihydroxy-3-methylbutanoate (2,3-dihydroxyisovalerate) into 2-oxo-3-methylbutanoate (2-oxoisovalerate), the penultimate precursor to L-isoleucine and L-valine, respectively.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS04560 ^@ http://purl.uniprot.org/uniprot/A5ULN7 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RNA polymerase beta chain family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The Rpo2 subunit (Rpo2N and Rpo2C in this organism) is implicated in DNA promoter recognition and in nucleotide binding.|||DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/420247:MSM_RS07380 ^@ http://purl.uniprot.org/uniprot/A5UN95 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the adenylosuccinate synthetase family.|||Binds 1 Mg(2+) ion per subunit.|||Cytoplasm|||Homodimer.|||Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP. http://togogenome.org/gene/420247:MSM_RS00355 ^@ http://purl.uniprot.org/uniprot/A5UJA2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic-type primase small subunit family.|||Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair.|||Heterodimer of a small subunit (PriS) and a large subunit (PriL). http://togogenome.org/gene/420247:MSM_RS06385 ^@ http://purl.uniprot.org/uniprot/A5UMP1 ^@ Function|||Similarity ^@ Belongs to the CDC6/cdc18 family.|||Involved in regulation of DNA replication. http://togogenome.org/gene/420247:MSM_RS03125 ^@ http://purl.uniprot.org/uniprot/A5UKV2 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SecE/SEC61-gamma family.|||Cell membrane|||Component of the Sec protein translocase complex. Heterotrimer consisting of SecY (alpha), SecG (beta) and SecE (gamma) subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. May interact with SecDF, and other proteins may be involved.|||Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. http://togogenome.org/gene/420247:MSM_RS01190 ^@ http://purl.uniprot.org/uniprot/A5UJS2 ^@ Activity Regulation|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peptidase T1A family.|||Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.|||Cytoplasm|||The 20S proteasome core is composed of 14 alpha and 14 beta subunits that assemble into four stacked heptameric rings, resulting in a barrel-shaped structure. The two inner rings, each composed of seven catalytic beta subunits, are sandwiched by two outer rings, each composed of seven alpha subunits. The catalytic chamber with the active sites is on the inside of the barrel. Has a gated structure, the ends of the cylinder being occluded by the N-termini of the alpha-subunits. Is capped at one or both ends by the proteasome regulatory ATPase, PAN.|||The formation of the proteasomal ATPase PAN-20S proteasome complex, via the docking of the C-termini of PAN into the intersubunit pockets in the alpha-rings, triggers opening of the gate for substrate entry. Interconversion between the open-gate and close-gate conformations leads to a dynamic regulation of the 20S proteasome proteolysis activity. http://togogenome.org/gene/420247:MSM_RS04655 ^@ http://purl.uniprot.org/uniprot/A5ULQ1 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the succinate/malate CoA ligase beta subunit family.|||Binds 1 Mg(2+) ion per subunit.|||Heterotetramer of two alpha and two beta subunits.|||Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. http://togogenome.org/gene/420247:MSM_RS05185 ^@ http://purl.uniprot.org/uniprot/A5UM07 ^@ Similarity ^@ Belongs to the DegT/DnrJ/EryC1 family. http://togogenome.org/gene/420247:MSM_RS04220 ^@ http://purl.uniprot.org/uniprot/A5ULH1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the archaeal histone HMF family.|||Chromosome|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS06335 ^@ http://purl.uniprot.org/uniprot/A5UMN1 ^@ Caution ^@ Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS04970 ^@ http://purl.uniprot.org/uniprot/A5ULW4 ^@ Function|||Similarity ^@ Belongs to the group II decarboxylase family. MfnA subfamily.|||Catalyzes the decarboxylation of L-tyrosine to produce tyramine for methanofuran biosynthesis. Can also catalyze the decarboxylation of L-aspartate to produce beta-alanine for coenzyme A (CoA) biosynthesis. http://togogenome.org/gene/420247:MSM_RS00425 ^@ http://purl.uniprot.org/uniprot/A5UJB6 ^@ Similarity ^@ Belongs to the pyrroline-5-carboxylate reductase family. http://togogenome.org/gene/420247:MSM_RS08095 ^@ http://purl.uniprot.org/uniprot/A5UNP2 ^@ Similarity ^@ Belongs to the deoxyhypusine synthase family. http://togogenome.org/gene/420247:MSM_RS04935 ^@ http://purl.uniprot.org/uniprot/A5ULV7 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the FtsA/MreB family.|||Cytoplasm|||Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature.|||Forms polymers.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS08160 ^@ http://purl.uniprot.org/uniprot/A5UNQ5 ^@ Function|||Similarity ^@ Belongs to the MfnB family.|||Catalyzes the formation of 4-(hydroxymethyl)-2-furancarboxaldehyde phosphate (4-HFC-P) from two molecules of glyceraldehyde-3-P (GA-3-P). http://togogenome.org/gene/420247:MSM_RS06825 ^@ http://purl.uniprot.org/uniprot/A5UMY1 ^@ Similarity ^@ Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. http://togogenome.org/gene/420247:MSM_RS06070 ^@ http://purl.uniprot.org/uniprot/A5UMH8 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the UppP family.|||Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP).|||Cell membrane http://togogenome.org/gene/420247:MSM_RS05130 ^@ http://purl.uniprot.org/uniprot/A5ULZ6 ^@ Similarity|||Subunit ^@ Belongs to the methyl-coenzyme M reductase beta subunit family.|||Hexamer of two alpha, two beta, and two gamma chains.|||MCR is a hexamer of two alpha, two beta, and two gamma chains, forming a dimer of heterotrimers. http://togogenome.org/gene/420247:MSM_RS03525 ^@ http://purl.uniprot.org/uniprot/A5UL32 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL31 family. http://togogenome.org/gene/420247:MSM_RS06840 ^@ http://purl.uniprot.org/uniprot/A5UMY4 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the CSL4 family.|||Component of the archaeal exosome complex. Forms a trimer of Rrp4 and/or Csl4 subunits. The trimer associates with an hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 heterodimers. Interacts with DnaG.|||Cytoplasm|||Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. http://togogenome.org/gene/420247:MSM_RS06160 ^@ http://purl.uniprot.org/uniprot/A5UMJ5 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the SurE nucleotidase family.|||Binds 1 divalent metal cation per subunit.|||Cytoplasm|||Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates. http://togogenome.org/gene/420247:MSM_RS04385 ^@ http://purl.uniprot.org/uniprot/A5ULK4 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the eIF-5A family.|||Cytoplasm|||Functions by promoting the formation of the first peptide bond. http://togogenome.org/gene/420247:MSM_RS02330 ^@ http://purl.uniprot.org/uniprot/A5UKE8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS03495 ^@ http://purl.uniprot.org/uniprot/A5UL26 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS06405 ^@ http://purl.uniprot.org/uniprot/A5UMP5 ^@ Similarity ^@ Belongs to the UPF0147 family. http://togogenome.org/gene/420247:MSM_RS07480 ^@ http://purl.uniprot.org/uniprot/A5UNB5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS03665 ^@ http://purl.uniprot.org/uniprot/A5UL61 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the cytidylate kinase family. Type 2 subfamily.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS00815 ^@ http://purl.uniprot.org/uniprot/A5UJJ5 ^@ Function ^@ CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). http://togogenome.org/gene/420247:MSM_RS05935 ^@ http://purl.uniprot.org/uniprot/A5UMF1 ^@ Cofactor|||Similarity|||Subcellular Location Annotation ^@ Belongs to the peptidase M48B family.|||Binds 1 zinc ion per subunit.|||Cell membrane|||Membrane http://togogenome.org/gene/420247:MSM_RS01600 ^@ http://purl.uniprot.org/uniprot/A5UK03 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the EhaA family.|||Cell membrane|||Membrane|||One of the integral membrane subunits of multisubunit membrane-bound [NiFe]-hydrogenase eha. Eha is predicted to form large electron transfer complex and might catalyze energy-driven reduction of low-potential redox carriers.|||Putative multisubunit membrane-bound [NiFe]-hydrogenase eha is composed of at least 20 subunits. http://togogenome.org/gene/420247:MSM_RS05795 ^@ http://purl.uniprot.org/uniprot/A5UMC3 ^@ Similarity ^@ Belongs to the anthranilate synthase component I family. http://togogenome.org/gene/420247:MSM_RS03185 ^@ http://purl.uniprot.org/uniprot/A5UKW3 ^@ Similarity ^@ Belongs to the HupF/HypC family. http://togogenome.org/gene/420247:MSM_RS04965 ^@ http://purl.uniprot.org/uniprot/A5ULW3 ^@ Similarity ^@ Belongs to the peptidase C59 family. http://togogenome.org/gene/420247:MSM_RS03625 ^@ http://purl.uniprot.org/uniprot/A5UL54 ^@ Caution|||Cofactor|||Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation ^@ Belongs to the adenosylhomocysteinase family.|||Binds 1 NAD(+) per subunit.|||Catalyzes the hydrolysis of S-inosyl-L-homocysteine (SIH) to L-homocysteine (Hcy) and inosine. Likely functions in a S-adenosyl-L-methionine (SAM) recycling pathway from S-adenosyl-L-homocysteine (SAH) produced from SAM-dependent methylation reactions. Can also catalyze the reverse reaction in vitro, i.e. the synthesis of SIH from Hcy and inosine.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||SAH is a product of SAM methyltransferases and is known to be a feedback inhibitor of these enzymes. As a result of this inhibition, organisms have evolved efficient enzymes to metabolize SAH via different pathways. The pathway found in methanogens differs from the canonical pathway, it uses the deamination of S-adenosyl-L-homocysteine to form S-inosyl-L-homocysteine for the regeneration of SAM from S-adenosyl-L-homocysteine. http://togogenome.org/gene/420247:MSM_RS03680 ^@ http://purl.uniprot.org/uniprot/A5UL64 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the archaeal adenylate kinase family.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS06420 ^@ http://purl.uniprot.org/uniprot/A5UMP8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the DNA polymerase delta/II small subunit family.|||Heterodimer of a large subunit and a small subunit.|||Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase. http://togogenome.org/gene/420247:MSM_RS03605 ^@ http://purl.uniprot.org/uniprot/A5UL50 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the aconitase/IPM isomerase family. LeuC type 2 subfamily.|||Binds 1 [4Fe-4S] cluster per subunit.|||Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.|||Heterodimer of LeuC and LeuD. http://togogenome.org/gene/420247:MSM_RS06190 ^@ http://purl.uniprot.org/uniprot/A5UMK2 ^@ Cofactor|||Similarity ^@ Belongs to the TPP enzyme family.|||Binds 1 Mg(2+) ion per subunit.|||Binds 1 thiamine pyrophosphate per subunit. http://togogenome.org/gene/420247:MSM_RS05085 ^@ http://purl.uniprot.org/uniprot/A5ULY7 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the MtrA family.|||Binds 1 5-hydroxybenzimidazolylcobamide group.|||Cell membrane|||Part of a complex that catalyzes the formation of methyl-coenzyme M and tetrahydromethanopterin from coenzyme M and methyl-tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.|||The complex is composed of 8 subunits; MtrA, MtrB, MtrC, MtrD, MtrE, MtrF, MtrG and MtrH. http://togogenome.org/gene/420247:MSM_RS07015 ^@ http://purl.uniprot.org/uniprot/A5UN21 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.|||Membrane http://togogenome.org/gene/420247:MSM_RS02520 ^@ http://purl.uniprot.org/uniprot/A5UKI7 ^@ Similarity ^@ Belongs to the MCM family. http://togogenome.org/gene/420247:MSM_RS03775 ^@ http://purl.uniprot.org/uniprot/A5UL83 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS3 family.|||Binds the lower part of the 30S subunit head.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS04980 ^@ http://purl.uniprot.org/uniprot/A5ULW6 ^@ Similarity ^@ Belongs to the universal ribosomal protein uL16 family. http://togogenome.org/gene/420247:MSM_RS05595 ^@ http://purl.uniprot.org/uniprot/A5UM86 ^@ Function|||Similarity ^@ Acts as a chaperone.|||Belongs to the heat shock protein 70 family. http://togogenome.org/gene/420247:MSM_RS02935 ^@ http://purl.uniprot.org/uniprot/A5UKR2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS04180 ^@ http://purl.uniprot.org/uniprot/A5ULG5 ^@ Similarity ^@ Belongs to the glutaredoxin family. http://togogenome.org/gene/420247:MSM_RS06195 ^@ http://purl.uniprot.org/uniprot/A5UMK3 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.|||Cytoplasm|||Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. http://togogenome.org/gene/420247:MSM_RS06020 ^@ http://purl.uniprot.org/uniprot/A5UMG8 ^@ Subcellular Location Annotation ^@ Cytoplasm http://togogenome.org/gene/420247:MSM_RS05100 ^@ http://purl.uniprot.org/uniprot/A5ULZ0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the MtrD family.|||Cell membrane|||Part of a complex that catalyzes the formation of methyl-coenzyme M and tetrahydromethanopterin from coenzyme M and methyl-tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.|||The complex is composed of 8 subunits; MtrA, MtrB, MtrC, MtrD, MtrE, MtrF, MtrG and MtrH. http://togogenome.org/gene/420247:MSM_RS00790 ^@ http://purl.uniprot.org/uniprot/A5UJJ0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the CRISPR-associated endoribonuclease Cas2 protein family.|||CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.|||Homodimer, forms a heterotetramer with a Cas1 homodimer. http://togogenome.org/gene/420247:MSM_RS03510 ^@ http://purl.uniprot.org/uniprot/A5UL29 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the prefoldin alpha subunit family.|||Cytoplasm|||Heterohexamer of two alpha and four beta subunits.|||Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. http://togogenome.org/gene/420247:MSM_RS04680 ^@ http://purl.uniprot.org/uniprot/A5ULQ6 ^@ Similarity ^@ Belongs to the class-I fumarase family. http://togogenome.org/gene/420247:MSM_RS04515 ^@ http://purl.uniprot.org/uniprot/A5ULM8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS12 family.|||Part of the 30S ribosomal subunit.|||With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. http://togogenome.org/gene/420247:MSM_RS05030 ^@ http://purl.uniprot.org/uniprot/A5ULX6 ^@ Similarity ^@ Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. http://togogenome.org/gene/420247:MSM_RS03655 ^@ http://purl.uniprot.org/uniprot/A5UL59 ^@ Function|||Similarity ^@ Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.|||Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs. http://togogenome.org/gene/420247:MSM_RS03600 ^@ http://purl.uniprot.org/uniprot/A5UL49 ^@ Similarity ^@ Belongs to the alpha-IPM synthase/homocitrate synthase family. http://togogenome.org/gene/420247:MSM_RS07435 ^@ http://purl.uniprot.org/uniprot/A5UNA6 ^@ Cofactor|||Similarity ^@ Belongs to the DNA repair enzymes AP/ExoA family.|||Probably binds two magnesium or manganese ions per subunit. http://togogenome.org/gene/420247:MSM_RS07105 ^@ http://purl.uniprot.org/uniprot/A5UN39 ^@ Function|||Similarity|||Subunit ^@ Belongs to the FwdB family.|||Catalyzes the reversible oxidation of CO(2) and methanofuran (MFR) to N-formylmethanofuran (CHO-MFR). This enzyme is oxygen-labile.|||This enzyme is composed of six subunits FwdA, FwdC, FwdD, FwdE, FwdF and FwdG. http://togogenome.org/gene/420247:MSM_RS07305 ^@ http://purl.uniprot.org/uniprot/A5UN79 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 2 subfamily.|||Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS04405 ^@ http://purl.uniprot.org/uniprot/A5ULK8 ^@ Similarity ^@ Belongs to the HMBS family. http://togogenome.org/gene/420247:MSM_RS06985 ^@ http://purl.uniprot.org/uniprot/A5UN15 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Belongs to the ThiC family.|||Binds 1 [4Fe-4S] cluster per subunit. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS05600 ^@ http://purl.uniprot.org/uniprot/A5UM87 ^@ Caution|||Cofactor|||Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the DnaJ family.|||Binds 2 Zn(2+) ions per monomer.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.|||The J domain is necessary and sufficient to stimulate DnaK ATPase activity. Zinc center 1 plays an important role in the autonomous, DnaK-independent chaperone activity of DnaJ. Zinc center 2 is essential for interaction with DnaK and for DnaJ activity. http://togogenome.org/gene/420247:MSM_RS05310 ^@ http://purl.uniprot.org/uniprot/A5UM32 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the radical SAM superfamily. 7-carboxy-7-deazaguanine synthase family.|||Binds 1 S-adenosyl-L-methionine per subunit.|||Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS03565 ^@ http://purl.uniprot.org/uniprot/A5UL40 ^@ Caution|||Function|||Similarity ^@ Belongs to the adenylate kinase family. AK6 subfamily.|||Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS07180 ^@ http://purl.uniprot.org/uniprot/A5UN53 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS4 family.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.|||Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.|||With S5 and S12 plays an important role in translational accuracy. http://togogenome.org/gene/420247:MSM_RS00640 ^@ http://purl.uniprot.org/uniprot/A5UJF8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS03780 ^@ http://purl.uniprot.org/uniprot/A5UL84 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL22 family.|||Part of the 50S ribosomal subunit.|||The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.|||This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. http://togogenome.org/gene/420247:MSM_RS02820 ^@ http://purl.uniprot.org/uniprot/A5UKP1 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PhoU family.|||Cytoplasm|||Homodimer.|||Plays a role in the regulation of phosphate uptake. http://togogenome.org/gene/420247:MSM_RS02140 ^@ http://purl.uniprot.org/uniprot/A5UKB0 ^@ Function|||Similarity ^@ Belongs to the V-ATPase D subunit family.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. http://togogenome.org/gene/420247:MSM_RS03670 ^@ http://purl.uniprot.org/uniprot/A5UL62 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL34 family. http://togogenome.org/gene/420247:MSM_RS04370 ^@ http://purl.uniprot.org/uniprot/A5ULK1 ^@ Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family. http://togogenome.org/gene/420247:MSM_RS06690 ^@ http://purl.uniprot.org/uniprot/A5UMV2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS03970 ^@ http://purl.uniprot.org/uniprot/A5ULC2 ^@ Function|||Similarity ^@ Belongs to the HdrB family.|||Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B). http://togogenome.org/gene/420247:MSM_RS02145 ^@ http://purl.uniprot.org/uniprot/A5UKB1 ^@ Function|||Similarity ^@ Belongs to the ATPase alpha/beta chains family.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit. http://togogenome.org/gene/420247:MSM_RS00455 ^@ http://purl.uniprot.org/uniprot/A5UJC2 ^@ Similarity ^@ Belongs to the MtxX family. http://togogenome.org/gene/420247:MSM_RS03245 ^@ http://purl.uniprot.org/uniprot/A5UKX5 ^@ Similarity ^@ Belongs to the phosphohexose mutase family. http://togogenome.org/gene/420247:MSM_RS05785 ^@ http://purl.uniprot.org/uniprot/A5UMC1 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the anthranilate phosphoribosyltransferase family.|||Binds 2 magnesium ions per monomer.|||Catalyzes the transfer of the phosphoribosyl group of 5-phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA).|||Homodimer. http://togogenome.org/gene/420247:MSM_RS03790 ^@ http://purl.uniprot.org/uniprot/A5UL86 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL2 family.|||One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.|||Part of the 50S ribosomal subunit. Forms a bridge to the 30S subunit in the 70S ribosome. http://togogenome.org/gene/420247:MSM_RS07675 ^@ http://purl.uniprot.org/uniprot/A5UNF9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.|||Membrane http://togogenome.org/gene/420247:MSM_RS03840 ^@ http://purl.uniprot.org/uniprot/A5UL96 ^@ Similarity ^@ Belongs to the class-I fumarase family. http://togogenome.org/gene/420247:MSM_RS05760 ^@ http://purl.uniprot.org/uniprot/A5UMB6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the MurCDEF family. MurT subfamily.|||Forms a heterodimer with GatD.|||The lipid II isoglutaminyl synthase complex catalyzes the formation of alpha-D-isoglutamine in the cell wall lipid II stem peptide. The MurT subunit catalyzes the ATP-dependent amidation of D-glutamate residue of lipid II, converting it to an isoglutamine residue. http://togogenome.org/gene/420247:MSM_RS05970 ^@ http://purl.uniprot.org/uniprot/A5UMF8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the class-II aminoacyl-tRNA synthetase family.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS01390 ^@ http://purl.uniprot.org/uniprot/A5UJW1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the ribose 5-phosphate isomerase family.|||Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS04550 ^@ http://purl.uniprot.org/uniprot/A5ULN5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RNA polymerase beta' chain family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Forms part of the jaw domain.|||Part of the RNA polymerase complex. http://togogenome.org/gene/420247:MSM_RS04620 ^@ http://purl.uniprot.org/uniprot/A5ULP4 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the thiamine-phosphate synthase family.|||Binds 1 Mg(2+) ion per subunit.|||Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). http://togogenome.org/gene/420247:MSM_RS06095 ^@ http://purl.uniprot.org/uniprot/A5UMI2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the TMEM175 family.|||Membrane http://togogenome.org/gene/420247:MSM_RS05950 ^@ http://purl.uniprot.org/uniprot/A5UMF4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the activator 1 small subunits family. RfcL subfamily.|||Heteromultimer composed of small subunits (RfcS) and large subunits (RfcL).|||Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. http://togogenome.org/gene/420247:MSM_RS03865 ^@ http://purl.uniprot.org/uniprot/A5ULA1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS05590 ^@ http://purl.uniprot.org/uniprot/A5UM85 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GrpE family.|||Cytoplasm|||Homodimer.|||Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. http://togogenome.org/gene/420247:MSM_RS04760 ^@ http://purl.uniprot.org/uniprot/A5ULS2 ^@ Similarity ^@ Belongs to the HypD family. http://togogenome.org/gene/420247:MSM_RS06440 ^@ http://purl.uniprot.org/uniprot/A5UMQ2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the SLC41A transporter family.|||Membrane http://togogenome.org/gene/420247:MSM_RS04925 ^@ http://purl.uniprot.org/uniprot/A5ULV5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the exbB/tolQ family.|||Membrane http://togogenome.org/gene/420247:MSM_RS06295 ^@ http://purl.uniprot.org/uniprot/A5UMM3 ^@ Similarity|||Subunit ^@ Belongs to the alpha-IPM synthase/homocitrate synthase family.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS01410 ^@ http://purl.uniprot.org/uniprot/A5UJW5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the CofC family.|||Guanylyltransferase that catalyzes the activation of (2S)-2-phospholactate (2-PL) as (2S)-lactyl-2-diphospho-5'-guanosine, via the condensation of 2-PL with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS03760 ^@ http://purl.uniprot.org/uniprot/A5UL80 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic/archaeal RNase P protein component 1 family.|||Consists of a catalytic RNA component and at least 4-5 protein subunits.|||Cytoplasm|||Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. http://togogenome.org/gene/420247:MSM_RS07000 ^@ http://purl.uniprot.org/uniprot/A5UN18 ^@ Similarity ^@ Belongs to the SIS family. PHI subfamily. http://togogenome.org/gene/420247:MSM_RS03695 ^@ http://purl.uniprot.org/uniprot/A5UL67 ^@ Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL30 family.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS00630 ^@ http://purl.uniprot.org/uniprot/A5UJF6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the archaeal NMN adenylyltransferase family.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS04330 ^@ http://purl.uniprot.org/uniprot/A5ULJ3 ^@ Similarity ^@ Belongs to the peptidase U62 family. http://togogenome.org/gene/420247:MSM_RS06915 ^@ http://purl.uniprot.org/uniprot/A5UMZ9 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the diaminopimelate epimerase family.|||Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS04140 ^@ http://purl.uniprot.org/uniprot/A5ULF7 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the DapB family.|||Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.|||Cytoplasm|||Was originally thought to be a dihydrodipicolinate reductase (DHDPR), catalyzing the conversion of dihydrodipicolinate to tetrahydrodipicolinate. However, it was shown in E.coli that the substrate of the enzymatic reaction is not dihydrodipicolinate (DHDP) but in fact (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinic acid (HTPA), the product released by the DapA-catalyzed reaction. http://togogenome.org/gene/420247:MSM_RS03440 ^@ http://purl.uniprot.org/uniprot/A5UL13 ^@ Similarity ^@ Belongs to the TPP enzyme family. http://togogenome.org/gene/420247:MSM_RS02455 ^@ http://purl.uniprot.org/uniprot/A5UKH4 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the NucS endonuclease family.|||Cleaves both 3' and 5' ssDNA extremities of branched DNA structures.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS07235 ^@ http://purl.uniprot.org/uniprot/A5UN65 ^@ Similarity ^@ Belongs to the MEMO1 family. http://togogenome.org/gene/420247:MSM_RS01700 ^@ http://purl.uniprot.org/uniprot/A5UK23 ^@ Caution|||Function|||Similarity ^@ Belongs to the Nre family.|||Involved in DNA damage repair.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS02920 ^@ http://purl.uniprot.org/uniprot/A5UKQ9 ^@ Caution|||Function|||Similarity ^@ Belongs to the MsrA Met sulfoxide reductase family.|||Belongs to the MsrB Met sulfoxide reductase family.|||Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS06545 ^@ http://purl.uniprot.org/uniprot/A5UMS3 ^@ Function|||Similarity ^@ Belongs to the DMRL synthase family.|||Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. http://togogenome.org/gene/420247:MSM_RS05190 ^@ http://purl.uniprot.org/uniprot/A5UM08 ^@ Function|||Similarity ^@ Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.|||Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. http://togogenome.org/gene/420247:MSM_RS04250 ^@ http://purl.uniprot.org/uniprot/A5ULH7 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CDP-archaeol synthase family.|||Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1-phosphate (DGGGP) and CTP. This reaction is the third ether-bond-formation step in the biosynthesis of archaeal membrane lipids.|||Cell membrane http://togogenome.org/gene/420247:MSM_RS05480 ^@ http://purl.uniprot.org/uniprot/A5UM68 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the NnrD/CARKD family.|||Belongs to the NnrE/AIBP family.|||Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.|||Binds 1 potassium ion per subunit.|||Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.|||Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.|||Homotetramer.|||In the C-terminal section; belongs to the NnrD/CARKD family.|||In the N-terminal section; belongs to the NnrE/AIBP family.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS07985 ^@ http://purl.uniprot.org/uniprot/A5UNL9 ^@ Similarity ^@ Belongs to the ABC transporter superfamily. http://togogenome.org/gene/420247:MSM_RS06745 ^@ http://purl.uniprot.org/uniprot/A5UMW4 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SHMT family.|||Catalyzes the reversible interconversion of serine and glycine with tetrahydromethanopterin (H4MPT) serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/420247:MSM_RS07205 ^@ http://purl.uniprot.org/uniprot/A5UN58 ^@ Similarity ^@ Belongs to the universal ribosomal protein uS9 family. http://togogenome.org/gene/420247:MSM_RS05945 ^@ http://purl.uniprot.org/uniprot/A5UMF3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the activator 1 small subunits family. RfcS subfamily.|||Heteromultimer composed of small subunits (RfcS) and large subunits (RfcL).|||Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. http://togogenome.org/gene/420247:MSM_RS01835 ^@ http://purl.uniprot.org/uniprot/A5UK48 ^@ Function|||Similarity|||Subunit ^@ Belongs to the glutaminase PdxT/SNO family.|||Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.|||In the presence of PdxS, forms a dodecamer of heterodimers. Only shows activity in the heterodimer. http://togogenome.org/gene/420247:MSM_RS02150 ^@ http://purl.uniprot.org/uniprot/A5UKB2 ^@ Function|||Similarity ^@ Belongs to the ATPase alpha/beta chains family.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. http://togogenome.org/gene/420247:MSM_RS04815 ^@ http://purl.uniprot.org/uniprot/A5ULT3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TOP6A family.|||Homodimer. Heterotetramer of two Top6A and two Top6B chains.|||Relaxes both positive and negative superturns and exhibits a strong decatenase activity. http://togogenome.org/gene/420247:MSM_RS04845 ^@ http://purl.uniprot.org/uniprot/A5ULT9 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.|||Cytoplasm|||Homotetramer. http://togogenome.org/gene/420247:MSM_RS01685 ^@ http://purl.uniprot.org/uniprot/A5UK20 ^@ Function|||Subunit ^@ Catalyzes the synthesis of GMP from XMP.|||Heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). http://togogenome.org/gene/420247:MSM_RS00125 ^@ http://purl.uniprot.org/uniprot/A5UJ54 ^@ Similarity ^@ Belongs to the glutamate synthase family. http://togogenome.org/gene/420247:MSM_RS03340 ^@ http://purl.uniprot.org/uniprot/A5UKZ3 ^@ Cofactor|||Similarity|||Subunit ^@ Belongs to the RtcB family.|||Binds 2 manganese ions per subunit.|||Monomer. http://togogenome.org/gene/420247:MSM_RS08195 ^@ http://purl.uniprot.org/uniprot/A5UNR2 ^@ Similarity ^@ Belongs to the UPF0440 family. http://togogenome.org/gene/420247:MSM_RS06730 ^@ http://purl.uniprot.org/uniprot/A5UMW0 ^@ Function|||Similarity ^@ Belongs to the eukaryotic RecA-like protein family.|||Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. http://togogenome.org/gene/420247:MSM_RS07470 ^@ http://purl.uniprot.org/uniprot/A5UNB3 ^@ Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eS8 family.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS00335 ^@ http://purl.uniprot.org/uniprot/A5UJ98 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 1 subfamily.|||Binds 1 zinc ion per subunit.|||Cytoplasm|||Homodimer.|||Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. http://togogenome.org/gene/420247:MSM_RS07255 ^@ http://purl.uniprot.org/uniprot/A5UN69 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ An RNase that has 5'-3' exonuclease activity. May be involved in RNA degradation.|||Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. Archaeal RNase J subfamily.|||Binds 2 Zn(2+) ions per subunit. It is not clear if Zn(2+) or Mg(2+) is physiologically important.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/420247:MSM_RS08170 ^@ http://purl.uniprot.org/uniprot/A5UNQ7 ^@ Cofactor|||Similarity ^@ Belongs to the eukaryotic ribosomal protein eL43 family.|||Binds 1 zinc ion per subunit. http://togogenome.org/gene/420247:MSM_RS04395 ^@ http://purl.uniprot.org/uniprot/A5ULK6 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the NAD kinase family.|||Cytoplasm|||Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS02255 ^@ http://purl.uniprot.org/uniprot/A5UKD3 ^@ Similarity ^@ Belongs to the UPF0145 family. http://togogenome.org/gene/420247:MSM_RS00795 ^@ http://purl.uniprot.org/uniprot/A5UJJ1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the CRISPR-associated endonuclease Cas1 family.|||CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.|||Homodimer, forms a heterotetramer with a Cas2 homodimer. http://togogenome.org/gene/420247:MSM_RS03730 ^@ http://purl.uniprot.org/uniprot/A5UL74 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS14 family. Zinc-binding uS14 subfamily.|||Binds 1 zinc ion per subunit.|||Binds 16S rRNA, required for the assembly of 30S particles.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS04570 ^@ http://purl.uniprot.org/uniprot/A5ULN9 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the archaeal Rpo5/eukaryotic RPB5 RNA polymerase subunit family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/420247:MSM_RS03130 ^@ http://purl.uniprot.org/uniprot/A5UKV3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the FtsZ family.|||Cytoplasm|||Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.|||Homodimer. Polymerizes to form a dynamic ring structure in a strictly GTP-dependent manner. Interacts directly with several other division proteins. http://togogenome.org/gene/420247:MSM_RS04280 ^@ http://purl.uniprot.org/uniprot/A5ULI3 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS05580 ^@ http://purl.uniprot.org/uniprot/A5UM83 ^@ Similarity ^@ Belongs to the carbamoyltransferase HypF family. http://togogenome.org/gene/420247:MSM_RS06305 ^@ http://purl.uniprot.org/uniprot/A5UMM5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS07500 ^@ http://purl.uniprot.org/uniprot/A5UNB9 ^@ Similarity ^@ Belongs to the HypE family. http://togogenome.org/gene/420247:MSM_RS05865 ^@ http://purl.uniprot.org/uniprot/A5UMD6 ^@ Function|||Subcellular Location Annotation|||Subunit ^@ Cytoplasm|||Heterodimer of HisH and HisF.|||IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. http://togogenome.org/gene/420247:MSM_RS03545 ^@ http://purl.uniprot.org/uniprot/A5UL36 ^@ Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eS19 family.|||May be involved in maturation of the 30S ribosomal subunit.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS00725 ^@ http://purl.uniprot.org/uniprot/A5UJH4 ^@ Activity Regulation|||Caution|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Allosterically activated by GTP, when glutamine is the substrate; GTP has no effect on the reaction when ammonia is the substrate. The allosteric effector GTP functions by stabilizing the protein conformation that binds the tetrahedral intermediate(s) formed during glutamine hydrolysis. Inhibited by the product CTP, via allosteric rather than competitive inhibition.|||Belongs to the CTP synthase family.|||CTPSs have evolved a hybrid strategy for distinguishing between UTP and CTP. The overlapping regions of the product feedback inhibitory and substrate sites recognize a common feature in both compounds, the triphosphate moiety. To differentiate isosteric substrate and product pyrimidine rings, an additional pocket far from the expected kinase/ligase catalytic site, specifically recognizes the cytosine and ribose portions of the product inhibitor.|||Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS00750 ^@ http://purl.uniprot.org/uniprot/A5UJI0 ^@ Function|||Similarity ^@ Belongs to the BPG-independent phosphoglycerate mutase family. A-PGAM subfamily.|||Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate. http://togogenome.org/gene/420247:MSM_RS00800 ^@ http://purl.uniprot.org/uniprot/A5UJJ2 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the CRISPR-associated exonuclease Cas4 family.|||CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).|||Mg(2+) or Mn(2+) required for ssDNA cleavage activity. http://togogenome.org/gene/420247:MSM_RS03995 ^@ http://purl.uniprot.org/uniprot/A5ULC8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the diphthine synthase family.|||Homodimer.|||S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis. http://togogenome.org/gene/420247:MSM_RS02315 ^@ http://purl.uniprot.org/uniprot/A5UKE5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the TMEM175 family.|||Membrane http://togogenome.org/gene/420247:MSM_RS01005 ^@ http://purl.uniprot.org/uniprot/A5UJN3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eL8 family.|||Cytoplasm|||Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.|||Part of the 50S ribosomal subunit. Probably part of the RNase P complex. http://togogenome.org/gene/420247:MSM_RS05255 ^@ http://purl.uniprot.org/uniprot/A5UM21 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.|||Binds 1 FMN per subunit.|||Catalyzes the conversion of dihydroorotate to orotate.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS05020 ^@ http://purl.uniprot.org/uniprot/A5ULX4 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.|||Binds 2 Zn(2+) ions per subunit.|||Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. http://togogenome.org/gene/420247:MSM_RS02505 ^@ http://purl.uniprot.org/uniprot/A5UKI4 ^@ Similarity ^@ Belongs to the metallophosphoesterase superfamily. YfcE family. http://togogenome.org/gene/420247:MSM_RS00850 ^@ http://purl.uniprot.org/uniprot/A5UJK2 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the AB hydrolase superfamily. MetX family.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine. http://togogenome.org/gene/420247:MSM_RS02005 ^@ http://purl.uniprot.org/uniprot/A5UK82 ^@ Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. http://togogenome.org/gene/420247:MSM_RS08600 ^@ http://purl.uniprot.org/uniprot/A5UNZ7 ^@ Similarity ^@ Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. http://togogenome.org/gene/420247:MSM_RS05415 ^@ http://purl.uniprot.org/uniprot/A5UM53 ^@ Subcellular Location Annotation ^@ Cell membrane|||Membrane http://togogenome.org/gene/420247:MSM_RS06895 ^@ http://purl.uniprot.org/uniprot/A5UMZ5 ^@ Cofactor|||Miscellaneous|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.|||Binds 1 pyridoxal phosphate per subunit.|||Cytoplasm|||Homodimer.|||May also have succinyldiaminopimelate aminotransferase activity, thus carrying out the corresponding step in lysine biosynthesis. http://togogenome.org/gene/420247:MSM_RS06350 ^@ http://purl.uniprot.org/uniprot/A5UMN4 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the archaeal riboflavin kinase family.|||Binds 1 Mg(2+) ion per subunit.|||Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN). http://togogenome.org/gene/420247:MSM_RS01445 ^@ http://purl.uniprot.org/uniprot/A5UJX2 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the FdhD family.|||Cytoplasm|||Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. http://togogenome.org/gene/420247:MSM_RS02865 ^@ http://purl.uniprot.org/uniprot/A5UKQ0 ^@ Cofactor|||Similarity ^@ Belongs to the radical SAM superfamily. Biotin synthase family.|||Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. http://togogenome.org/gene/420247:MSM_RS00825 ^@ http://purl.uniprot.org/uniprot/A5UJJ7 ^@ Function|||Similarity ^@ Belongs to the CRISPR-associated protein Cas6/Cse3/CasE family.|||CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). http://togogenome.org/gene/420247:MSM_RS04765 ^@ http://purl.uniprot.org/uniprot/A5ULS3 ^@ Function|||Similarity ^@ Belongs to the archaeal SPP-like hydrolase family.|||Catalyzes the dephosphorylation of 2-phosphoglycolate. http://togogenome.org/gene/420247:MSM_RS08615 ^@ http://purl.uniprot.org/uniprot/A5UP00 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MCH family.|||Catalyzes the reversible interconversion of 5-formyl-H(4)MPT to methenyl-H(4)MPT(+).|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS06510 ^@ http://purl.uniprot.org/uniprot/A5UMR6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS04520 ^@ http://purl.uniprot.org/uniprot/A5ULM9 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the methyl-coenzyme M reductase alpha subunit family.|||Binds 2 coenzyme F430 non-covalently per MCR complex. Coenzyme F430 is a yellow nickel porphinoid. Methyl-coenzyme-M reductase is activated when the enzyme-bound coenzyme F430 is reduced to the Ni(I) oxidation state.|||Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2-(methylthio)ethanesulfonate) using coenzyme B (CoB or 7-mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis.|||Hexamer of two alpha, two beta, and two gamma chains.|||MCR is a hexamer of two alpha, two beta, and two gamma chains, forming a dimer of heterotrimers. http://togogenome.org/gene/420247:MSM_RS04905 ^@ http://purl.uniprot.org/uniprot/A5ULV1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the CofD family.|||Catalyzes the transfer of the 2-phospholactate moiety from (2S)-lactyl-2-diphospho-5'-guanosine to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of oxidized coenzyme F420-0 and GMP.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS04695 ^@ http://purl.uniprot.org/uniprot/A5ULQ9 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the aTrm56 family.|||Cytoplasm|||Homodimer.|||Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. http://togogenome.org/gene/420247:MSM_RS03690 ^@ http://purl.uniprot.org/uniprot/A5UL66 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL15 family.|||Binds to the 23S rRNA.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS04145 ^@ http://purl.uniprot.org/uniprot/A5ULF8 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the DapA family.|||Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).|||Cytoplasm|||Homotetramer; dimer of dimers.|||Was originally thought to be a dihydrodipicolinate synthase (DHDPS), catalyzing the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to dihydrodipicolinate (DHDP). However, it was shown in E.coli that the product of the enzymatic reaction is not dihydrodipicolinate but in fact (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid (HTPA), and that the consecutive dehydration reaction leading to DHDP is not spontaneous but catalyzed by DapB. http://togogenome.org/gene/420247:MSM_RS04390 ^@ http://purl.uniprot.org/uniprot/A5ULK5 ^@ Cofactor|||Similarity ^@ Belongs to the PdaD family.|||Binds 1 pyruvoyl group covalently per subunit. http://togogenome.org/gene/420247:MSM_RS04380 ^@ http://purl.uniprot.org/uniprot/A5ULK3 ^@ Similarity ^@ Belongs to the arginase family. Agmatinase subfamily. http://togogenome.org/gene/420247:MSM_RS05095 ^@ http://purl.uniprot.org/uniprot/A5ULY9 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the MtrC family.|||Cell membrane|||Membrane|||Part of a complex that catalyzes the formation of methyl-coenzyme M and tetrahydromethanopterin from coenzyme M and methyl-tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.|||The complex is composed of 8 subunits; MtrA, MtrB, MtrC, MtrD, MtrE, MtrF, MtrG and MtrH. http://togogenome.org/gene/420247:MSM_RS00260 ^@ http://purl.uniprot.org/uniprot/A5UJ82 ^@ Function|||Similarity ^@ Belongs to the archaeal-type DHQ synthase family.|||Catalyzes the oxidative deamination and cyclization of 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonic acid (ADH) to yield 3-dehydroquinate (DHQ), which is fed into the canonical shikimic pathway of aromatic amino acid biosynthesis. http://togogenome.org/gene/420247:MSM_RS06720 ^@ http://purl.uniprot.org/uniprot/A5UMV8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS08590 ^@ http://purl.uniprot.org/uniprot/A5UNZ5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the exbB/tolQ family.|||Membrane http://togogenome.org/gene/420247:MSM_RS02430 ^@ http://purl.uniprot.org/uniprot/A5UKG9 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the RNase Z family.|||Binds 2 Zn(2+) ions.|||Homodimer.|||Zinc phosphodiesterase, which displays some tRNA 3'-processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA. http://togogenome.org/gene/420247:MSM_RS07230 ^@ http://purl.uniprot.org/uniprot/A5UN64 ^@ Similarity ^@ Belongs to the universal ribosomal protein uS2 family. http://togogenome.org/gene/420247:MSM_RS00305 ^@ http://purl.uniprot.org/uniprot/A5UJ91 ^@ Similarity ^@ Belongs to the UPF0305 family. http://togogenome.org/gene/420247:MSM_RS06345 ^@ http://purl.uniprot.org/uniprot/A5UMN3 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the DHBP synthase family.|||Binds 2 divalent metal cations per subunit. Magnesium or manganese.|||Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS00710 ^@ http://purl.uniprot.org/uniprot/A5UJH2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS05090 ^@ http://purl.uniprot.org/uniprot/A5ULY8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the MtrB family.|||Cell membrane|||Membrane|||Part of a complex that catalyzes the formation of methyl-coenzyme M and tetrahydromethanopterin from coenzyme M and methyl-tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.|||The complex is composed of 8 subunits; MtrA, MtrB, MtrC, MtrD, MtrE, MtrF, MtrG and MtrH. http://togogenome.org/gene/420247:MSM_RS05500 ^@ http://purl.uniprot.org/uniprot/A5UM72 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS01645 ^@ http://purl.uniprot.org/uniprot/A5UK12 ^@ Function|||Similarity|||Subunit ^@ Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.|||Belongs to the GatB/GatE family. GatE subfamily.|||Heterodimer of GatD and GatE. http://togogenome.org/gene/420247:MSM_RS03370 ^@ http://purl.uniprot.org/uniprot/A5UKZ9 ^@ Function|||Similarity ^@ Belongs to the archaeal 6-HMPDK family.|||Catalyzes the transfer of diphosphate from ATP to 6-hydroxymethyl-7,8-dihydropterin (6-HMD), leading to 6-hydroxymethyl-7,8-dihydropterin diphosphate (6-HMDP). http://togogenome.org/gene/420247:MSM_RS02790 ^@ http://purl.uniprot.org/uniprot/A5UKN5 ^@ Subunit ^@ Heterotetramer of one alpha, one beta, one delta and one gamma chain. http://togogenome.org/gene/420247:MSM_RS00550 ^@ http://purl.uniprot.org/uniprot/A5UJE0 ^@ Similarity ^@ Belongs to the helicase family. UvrD subfamily. http://togogenome.org/gene/420247:MSM_RS08055 ^@ http://purl.uniprot.org/uniprot/A5UNN3 ^@ Similarity ^@ Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family. http://togogenome.org/gene/420247:MSM_RS07845 ^@ http://purl.uniprot.org/uniprot/A5UNJ2 ^@ Caution|||Function|||Similarity ^@ Belongs to the CobB/CobQ family. CobQ subfamily.|||Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS01345 ^@ http://purl.uniprot.org/uniprot/A5UJV2 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 2 subfamily.|||Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.|||Cytoplasm|||ValRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated threonine is translocated from the active site to the editing site. http://togogenome.org/gene/420247:MSM_RS05515 ^@ http://purl.uniprot.org/uniprot/A5UM75 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products.|||Belongs to the Holliday junction resolvase Hjc family.|||Binds 1 Mg(2+) ion per subunit.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS07905 ^@ http://purl.uniprot.org/uniprot/A5UNK4 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the ribose-phosphate pyrophosphokinase family. Class III (archaeal) subfamily.|||Binds 2 Mg(2+) ions per subunit.|||Cytoplasm|||Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P). http://togogenome.org/gene/420247:MSM_RS06875 ^@ http://purl.uniprot.org/uniprot/A5UMZ1 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the HisA/HisF family.|||Cytoplasm|||Heterodimer of HisH and HisF.|||IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. http://togogenome.org/gene/420247:MSM_RS03155 ^@ http://purl.uniprot.org/uniprot/A5UKV8 ^@ Domain|||Function|||Similarity|||Subunit ^@ Belongs to the TFE family.|||Monomer. Interaction with RNA polymerase subunits RpoF and RpoE is necessary for Tfe stimulatory transcription activity. Able to interact with Tbp and RNA polymerase in the absence of DNA promoter. Interacts both with the preinitiation and elongation complexes.|||The winged helix domain is involved in binding to DNA in the preinitiation complex.|||Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems to translocate with the RNA polymerase following initiation and acts by binding to the non template strand of the transcription bubble in elongation complexes. http://togogenome.org/gene/420247:MSM_RS01355 ^@ http://purl.uniprot.org/uniprot/A5UJV4 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 2 subfamily.|||Cytoplasm|||Tetramer of two alpha and two beta subunits. http://togogenome.org/gene/420247:MSM_RS07210 ^@ http://purl.uniprot.org/uniprot/A5UN59 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the archaeal Rpo10/eukaryotic RPB10 RNA polymerase subunit family.|||Binds 1 zinc ion.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/420247:MSM_RS05820 ^@ http://purl.uniprot.org/uniprot/A5UMC8 ^@ Similarity|||Subunit ^@ Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.|||Homotetramer. Residues from neighboring subunits contribute catalytic and substrate-binding residues to each active site. http://togogenome.org/gene/420247:MSM_RS04735 ^@ http://purl.uniprot.org/uniprot/A5ULR7 ^@ Similarity ^@ Belongs to the myo-inositol 1-phosphate synthase family. http://togogenome.org/gene/420247:MSM_RS06480 ^@ http://purl.uniprot.org/uniprot/A5UMR0 ^@ Caution|||Function|||Miscellaneous|||Similarity ^@ Belongs to the thiamine-monophosphate kinase family.|||Catalyzes the ATP-dependent phosphorylation of thiamine-monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Reaction mechanism of ThiL seems to utilize a direct, inline transfer of the gamma-phosphate of ATP to TMP rather than a phosphorylated enzyme intermediate. http://togogenome.org/gene/420247:MSM_RS03105 ^@ http://purl.uniprot.org/uniprot/A5UKU8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL10 family.|||Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.|||Part of the 50S ribosomal subunit. Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Forms a heptameric L10(L12)2(L12)2(L12)2 complex, where L10 forms an elongated spine to which the L12 dimers bind in a sequential fashion. http://togogenome.org/gene/420247:MSM_RS06600 ^@ http://purl.uniprot.org/uniprot/A5UMT4 ^@ Similarity ^@ Belongs to the glucose-1-phosphate thymidylyltransferase family. http://togogenome.org/gene/420247:MSM_RS00885 ^@ http://purl.uniprot.org/uniprot/A5UJK9 ^@ Similarity ^@ Belongs to the snRNP Sm proteins family. http://togogenome.org/gene/420247:MSM_RS03540 ^@ http://purl.uniprot.org/uniprot/A5UL35 ^@ Similarity ^@ Belongs to the PDCD5 family. http://togogenome.org/gene/420247:MSM_RS02295 ^@ http://purl.uniprot.org/uniprot/A5UKE1 ^@ Function|||Miscellaneous|||Similarity ^@ Belongs to the L-aspartate dehydrogenase family.|||Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.|||The iminoaspartate product is unstable in aqueous solution and can decompose to oxaloacetate and ammonia. http://togogenome.org/gene/420247:MSM_RS03935 ^@ http://purl.uniprot.org/uniprot/A5ULB6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS05845 ^@ http://purl.uniprot.org/uniprot/A5UMD3 ^@ Function|||Similarity ^@ Belongs to the pseudouridine synthase TruD family.|||Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs. http://togogenome.org/gene/420247:MSM_RS04495 ^@ http://purl.uniprot.org/uniprot/A5ULM4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS10 family.|||Involved in the binding of tRNA to the ribosomes.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/420247:MSM_RS02835 ^@ http://purl.uniprot.org/uniprot/A5UKP4 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.|||Membrane http://togogenome.org/gene/420247:MSM_RS03675 ^@ http://purl.uniprot.org/uniprot/A5UL63 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS04185 ^@ http://purl.uniprot.org/uniprot/A5ULG6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the helicase family. Hel308 subfamily.|||DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks.|||Monomer. http://togogenome.org/gene/420247:MSM_RS07545 ^@ http://purl.uniprot.org/uniprot/A5UNC8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SRP19 family.|||Cytoplasm|||Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.|||Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. Archaeal SRP consists of a 7S RNA molecule of 300 nucleotides and two protein subunits: SRP54 and SRP19. http://togogenome.org/gene/420247:MSM_RS06245 ^@ http://purl.uniprot.org/uniprot/A5UML3 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn).|||Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.|||Binds 3 Mg(2+) cations per subunit. The strongest magnesium site (Mg1) is bound to the beta- and gamma-phosphates of ATP and four water molecules complete its coordination sphere.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/420247:MSM_RS06565 ^@ http://purl.uniprot.org/uniprot/A5UMS7 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the aconitase/IPM isomerase family. LeuC type 2 subfamily.|||Binds 1 [4Fe-4S] cluster per subunit.|||Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.|||Heterodimer of LeuC and LeuD. http://togogenome.org/gene/420247:MSM_RS00310 ^@ http://purl.uniprot.org/uniprot/A5UJ92 ^@ Similarity|||Subunit ^@ Belongs to the HTP reductase family.|||Homodimer. http://togogenome.org/gene/420247:MSM_RS01320 ^@ http://purl.uniprot.org/uniprot/A5UJU7 ^@ Similarity ^@ Belongs to the transferase hexapeptide repeat family. http://togogenome.org/gene/420247:MSM_RS01060 ^@ http://purl.uniprot.org/uniprot/A5UJP5 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the DtxR/MntR family.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/420247:MSM_RS03950 ^@ http://purl.uniprot.org/uniprot/A5ULB8 ^@ Function|||Similarity ^@ Belongs to the 2-phosphoglycerate kinase family.|||Catalyzes the phosphorylation of 2-phosphoglycerate to 2,3-diphosphoglycerate. Involved in the biosynthesis of cyclic 2,3-bisphosphoglycerate, a thermoprotectant. http://togogenome.org/gene/420247:MSM_RS00990 ^@ http://purl.uniprot.org/uniprot/A5UJN0 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the NDK family.|||Cytoplasm|||Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. http://togogenome.org/gene/420247:MSM_RS01555 ^@ http://purl.uniprot.org/uniprot/A5UJZ4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/420247:MSM_RS06180 ^@ http://purl.uniprot.org/uniprot/A5UMK0 ^@ Similarity ^@ Belongs to the beta-class carbonic anhydrase family. http://togogenome.org/gene/420247:MSM_RS03845 ^@ http://purl.uniprot.org/uniprot/A5UL97 ^@ Function ^@ Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system. http://togogenome.org/gene/420247:MSM_RS02260 ^@ http://purl.uniprot.org/uniprot/A5UKD4 ^@ Similarity ^@ Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. http://togogenome.org/gene/420247:MSM_RS05070 ^@ http://purl.uniprot.org/uniprot/A5ULY4 ^@ Similarity ^@ Belongs to the MtrH family. http://togogenome.org/gene/420247:MSM_RS04235 ^@ http://purl.uniprot.org/uniprot/A5ULH4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the LeuD family. LeuD type 2 subfamily.|||Heterotetramer of 2 HacA and 2 HacB proteins.|||Hydro-lyase with broad substrate specificity for cis-unsaturated tricarboxylic acids. Catalyzes both the reversible dehydration of (R)-homocitrate ((R)-2-hydroxybutane-1,2,4-tricarboxylate) to produce cis-homoaconitate ((Z)-but-1-ene-1,2,4-tricarboxylate), and its hydration to homoisocitrate ((1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate). Is also able to hydrate the analogous longer chain substrates cis-homo(2)-aconitate, cis-homo(3)-aconitate. All these reactions are part of the biosynthesis pathway of coenzyme B. http://togogenome.org/gene/420247:MSM_RS08680 ^@ http://purl.uniprot.org/uniprot/A5UP13 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) family. Azg-like subfamily.|||Membrane http://togogenome.org/gene/420247:MSM_RS01275 ^@ http://purl.uniprot.org/uniprot/A5UJT9 ^@ Similarity ^@ Belongs to the desulfoferrodoxin family. http://togogenome.org/gene/420247:MSM_RS01640 ^@ http://purl.uniprot.org/uniprot/A5UK11 ^@ Function|||Similarity|||Subunit ^@ Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.|||Belongs to the asparaginase 1 family. GatD subfamily.|||Heterodimer of GatD and GatE. http://togogenome.org/gene/420247:MSM_RS01290 ^@ http://purl.uniprot.org/uniprot/A5UJU2 ^@ Similarity ^@ Belongs to the trans-sulfuration enzymes family. http://togogenome.org/gene/420247:MSM_RS05235 ^@ http://purl.uniprot.org/uniprot/A5UM17 ^@ Similarity ^@ Belongs to the LDH2/MDH2 oxidoreductase family. http://togogenome.org/gene/420247:MSM_RS01325 ^@ http://purl.uniprot.org/uniprot/A5UJU8 ^@ Similarity ^@ Belongs to the cysteine synthase/cystathionine beta-synthase family. http://togogenome.org/gene/420247:MSM_RS05460 ^@ http://purl.uniprot.org/uniprot/A5UM64 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the sirtuin family. Class U subfamily.|||Binds 1 zinc ion per subunit.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form. Deacetylates the N-terminal lysine residue of Alba, the major archaeal chromatin protein and that, in turn, increases Alba's DNA binding affinity, thereby repressing transcription. http://togogenome.org/gene/420247:MSM_RS06230 ^@ http://purl.uniprot.org/uniprot/A5UML0 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily.|||Cytoplasm http://togogenome.org/gene/420247:MSM_RS05215 ^@ http://purl.uniprot.org/uniprot/A5UM13 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class I-like SAM-binding methyltransferase superfamily. TRM5/TYW2 family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||S-adenosyl-L-methionine-dependent transferase that acts as a component of the wyosine derivatives biosynthesis pathway. Catalyzes the transfer of the alpha-amino-alpha-carboxypropyl (acp) group from S-adenosyl-L-methionine to 4-demethylwyosine (imG-14), forming 7-aminocarboxypropyl-demethylwyosine (wybutosine-86) at position 37 of tRNA(Phe). http://togogenome.org/gene/420247:MSM_RS08040 ^@ http://purl.uniprot.org/uniprot/A5UNN0 ^@ Similarity ^@ Belongs to the UPF0235 family.